Literature DB >> 24664497

Algorithm for fast monoexponential fitting based on Auto-Regression on Linear Operations (ARLO) of data.

Mengchao Pei1, Thanh D Nguyen, Nanda D Thimmappa, Carlo Salustri, Fang Dong, Mitch A Cooper, Jianqi Li, Martin R Prince, Yi Wang.   

Abstract

PURPOSE: To develop a fast and accurate monoexponential fitting algorithm based on Auto-Regression on Linear Operations (ARLO) of data, and to validate its accuracy and computational speed by comparing it with the conventional Levenberg-Marquardt (LM) and Log-Linear (LL) algorithms.
METHODS: ARLO, LM, and LL performances for T2* mapping were evaluated in simulation and in vivo imaging of liver (n=15) and myocardial (n=1) iron overload patients and the brain (two healthy volunteers).
RESULTS: In simulations, ARLO consistently delivered accuracy similar to LM and significantly superior to LL. In in vivo mapping of T2 * values, ARLO showed excellent agreement with LM, while LL showed only limited agreements with ARLO and LM. Compared with LM and LL in the liver, ARLO was 125 and 8 times faster using our Matlab implementations, and 156 and 13 times faster using our C++ implementations. In C++ implementations, ARLO reduced the online whole-brain processing time from 9 min 15 s of LM and 35 s of LL to 2.7 s, providing T2 * maps approximately in real time.
CONCLUSION: Due to comparable accuracy and significantly higher speed, ARLO can be considered as a valid alternative to the conventional LM algorithm for online T2 * mapping.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  Levenberg-Marquardt; Log-Linear; T2* mapping; autoregression; iron overload

Mesh:

Year:  2014        PMID: 24664497      PMCID: PMC4175304          DOI: 10.1002/mrm.25137

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  21 in total

1.  Quantitative MR imaging of brain iron: a postmortem validation study.

Authors:  Christian Langkammer; Nikolaus Krebs; Walter Goessler; Eva Scheurer; Franz Ebner; Kathrin Yen; Franz Fazekas; Stefan Ropele
Journal:  Radiology       Date:  2010-09-15       Impact factor: 11.105

2.  MRI R2 and R2* mapping accurately estimates hepatic iron concentration in transfusion-dependent thalassemia and sickle cell disease patients.

Authors:  John C Wood; Cathleen Enriquez; Nilesh Ghugre; J Michael Tyzka; Susan Carson; Marvin D Nelson; Thomas D Coates
Journal:  Blood       Date:  2005-04-28       Impact factor: 22.113

3.  Accurate liver T2 measurement of iron overload: a simulations investigation and in vivo study.

Authors:  Marine Beaumont; Isaac Odame; Paul S Babyn; Logi Vidarsson; Melanie Kirby-Allen; Hai-Ling Margaret Cheng
Journal:  J Magn Reson Imaging       Date:  2009-08       Impact factor: 4.813

4.  Age-related iron deposition in the basal ganglia: quantitative analysis in healthy subjects.

Authors:  Domenico Aquino; Alberto Bizzi; Marina Grisoli; Barbara Garavaglia; Maria Grazia Bruzzone; Nardo Nardocci; Mario Savoiardo; Luisa Chiapparini
Journal:  Radiology       Date:  2009-07       Impact factor: 11.105

5.  On T2* magnetic resonance and cardiac iron.

Authors:  John-Paul Carpenter; Taigang He; Paul Kirk; Michael Roughton; Lisa J Anderson; Sofia V de Noronha; Mary N Sheppard; John B Porter; J Malcolm Walker; John C Wood; Renzo Galanello; Gianluca Forni; Gualtiero Catani; Gildo Matta; Suthat Fucharoen; Adam Fleming; Michael J House; Greg Black; David N Firmin; Timothy G St Pierre; Dudley J Pennell
Journal:  Circulation       Date:  2011-03-28       Impact factor: 29.690

6.  Limitations of using logarithmic transformation and linear fitting to estimate relaxation rates in iron-loaded liver.

Authors:  Randolph Otto; Mark R Ferguson; Kenneth Marro; John W Grinstead; Seth D Friedman
Journal:  Pediatr Radiol       Date:  2011-05-24

7.  Improved R2* measurement accuracy with absolute SNR truncation and optimal coil combination.

Authors:  Xiaoming Yin; Saurabh Shah; Aggelos K Katsaggelos; Andrew C Larson
Journal:  NMR Biomed       Date:  2010-12       Impact factor: 4.044

8.  Multiecho water-fat separation and simultaneous R2* estimation with multifrequency fat spectrum modeling.

Authors:  Huanzhou Yu; Ann Shimakawa; Charles A McKenzie; Ethan Brodsky; Jean H Brittain; Scott B Reeder
Journal:  Magn Reson Med       Date:  2008-11       Impact factor: 4.668

9.  Calculating T2 in images from a phased array receiver.

Authors:  Peter A Hardy; Anders H Andersen
Journal:  Magn Reson Med       Date:  2009-04       Impact factor: 4.668

10.  R2* magnetic resonance imaging of the liver in patients with iron overload.

Authors:  Jane S Hankins; M Beth McCarville; Ralf B Loeffler; Matthew P Smeltzer; Mihaela Onciu; Fredric A Hoffer; Chin-Shang Li; Winfred C Wang; Russell E Ware; Claudia M Hillenbrand
Journal:  Blood       Date:  2009-03-04       Impact factor: 22.113

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  18 in total

1.  Fast quantitative parameter maps without fitting: Integration yields accurate mono-exponential signal decay rates.

Authors:  Ruitian Song; Ralf B Loeffler; Joseph L Holtrop; M Beth McCarville; Jane S Hankins; Claudia M Hillenbrand
Journal:  Magn Reson Med       Date:  2017-10-30       Impact factor: 4.668

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Authors:  Jingwei Zhang; Tian Liu; Ajay Gupta; Pascal Spincemaille; Thanh D Nguyen; Yi Wang
Journal:  Magn Reson Med       Date:  2014-09-26       Impact factor: 4.668

3.  Automated adaptive preconditioner for quantitative susceptibility mapping.

Authors:  Zhe Liu; Yan Wen; Pascal Spincemaille; Shun Zhang; Yihao Yao; Thanh D Nguyen; Yi Wang
Journal:  Magn Reson Med       Date:  2019-08-11       Impact factor: 4.668

4.  Fast and accurate compensation of signal offset for T2 mapping.

Authors:  Jan Michálek; Pavla Hanzlíková; Tuan Trinh; Dalibor Pacík
Journal:  MAGMA       Date:  2019-02-07       Impact factor: 2.310

5.  Rapid automated liver quantitative susceptibility mapping.

Authors:  Ramin Jafari; Sujit Sheth; Pascal Spincemaille; Thanh D Nguyen; Martin R Prince; Yan Wen; Yihao Guo; Kofi Deh; Zhe Liu; Daniel Margolis; Gary M Brittenham; Andrea S Kierans; Yi Wang
Journal:  J Magn Reson Imaging       Date:  2019-01-13       Impact factor: 4.813

6.  Brain Iron Distribution after Multiple Doses of Ultra-small Superparamagnetic Iron Oxide Particles in Rats.

Authors:  Andrew W Gorman; Kofi M Deh; Caspar M Schwiedrzik; Julie R White; Ernest Victor Groman; Clark A Fisher; Kelly M Gillen; Pascal Spincemaille; Skye Rasmussen; Martin R Prince; Henning U Voss; Winrich A Freiwald; Yi Wang
Journal:  Comp Med       Date:  2018-04-02       Impact factor: 0.982

7.  Cardiac quantitative susceptibility mapping (QSM) for heart chamber oxygenation.

Authors:  Yan Wen; Thanh D Nguyen; Zhe Liu; Pascal Spincemaille; Dong Zhou; Alexey Dimov; Youngwook Kee; Kofi Deh; Jiwon Kim; Jonathan W Weinsaft; Yi Wang
Journal:  Magn Reson Med       Date:  2017-06-26       Impact factor: 4.668

8.  Clinical Integration of Automated Processing for Brain Quantitative Susceptibility Mapping: Multi-Site Reproducibility and Single-Site Robustness.

Authors:  Pascal Spincemaille; Zhe Liu; Shun Zhang; Ilhami Kovanlikaya; Matteo Ippoliti; Marcus Makowski; Richard Watts; Ludovic de Rochefort; Vijay Venkatraman; Patricia Desmond; Mathieu D Santin; Stéphane Lehéricy; Brian H Kopell; Patrice Péran; Yi Wang
Journal:  J Neuroimaging       Date:  2019-08-04       Impact factor: 2.486

9.  Use of 2D U-Net Convolutional Neural Networks for Automated Cartilage and Meniscus Segmentation of Knee MR Imaging Data to Determine Relaxometry and Morphometry.

Authors:  Berk Norman; Valentina Pedoia; Sharmila Majumdar
Journal:  Radiology       Date:  2018-03-27       Impact factor: 11.105

10.  Cluster analysis of time evolution (CAT) for quantitative susceptibility mapping (QSM) and quantitative blood oxygen level-dependent magnitude (qBOLD)-based oxygen extraction fraction (OEF) and cerebral metabolic rate of oxygen (CMRO2 ) mapping.

Authors:  Junghun Cho; Shun Zhang; Youngwook Kee; Pascal Spincemaille; Thanh D Nguyen; Simon Hubertus; Ajay Gupta; Yi Wang
Journal:  Magn Reson Med       Date:  2019-09-10       Impact factor: 4.668

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