Literature DB >> 26282620

HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Christoph Wiedemann1,2, Nishit Goradia1, Sabine Häfner1, Christian Herbst1,3, Matthias Görlach1, Oliver Ohlenschläger1, Ramadurai Ramachandran4.   

Abstract

A simple triple resonance NMR experiment that leads to the correlation of the backbone amide resonances of each amino acid residue 'i' with that of residues 'i-1' and 'i+1' in ((13)C, (15)N) labelled intrinsically disordered proteins (IDPs) is presented. The experimental scheme, {HN-NCA heteronuclear TOCSY-NH}, exploits the favourable relaxation properties of IDPs and the presence of (1) J CαN and (2) J CαN couplings to transfer the (15)N x magnetisation from amino acid residue 'i' to adjacent residues via the application of a band-selective (15)N-(13)C(α) heteronuclear cross-polarisation sequence of ~100 ms duration. Employing non-uniform sampling in the indirect dimensions, the efficacy of the approach has been demonstrated by the acquisition of 3D HNN chemical shift correlation spectra of α-synuclein. The experimental performance of the RF pulse sequence has been compared with that of the conventional INEPT-based HN(CA)NH pulse scheme. As the availability of data from both the HCCNH and HNN experiments will make it possible to use the information extracted from one experiment to simplify the analysis of the data of the other and lead to a robust approach for unambiguous backbone and side-chain resonance assignments, a time-saving strategy for the simultaneous collection of HCCNH and HNN data is also described.

Entities:  

Keywords:  Heteronuclear cross polarisation; Intrinsically disordered protein region; NMR spectroscopy; Non-uniform sampling; Sequential resonance assignment

Mesh:

Substances:

Year:  2015        PMID: 26282620     DOI: 10.1007/s10858-015-9976-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  65 in total

1.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

2.  Broadband homonuclear TOCSY with amplitude and phase-modulated RF mixing schemes.

Authors:  Anika Kirschstein; Christian Herbst; Kerstin Riedel; Michela Carella; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-03-04       Impact factor: 2.835

3.  Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Authors:  Jiří Nováček; Lubomír Janda; Radka Dopitová; Lukáš Žídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2013-07-23       Impact factor: 2.835

4.  Direct correlation of consecutive C'-N groups in proteins: a method for the assignment of intrinsically disordered proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2013-08-09       Impact factor: 2.835

5.  Sensitivity enhancement for maximally resolved two-dimensional NMR by nonuniform sampling.

Authors:  David Rovnyak; Mark Sarcone; Ze Jiang
Journal:  Magn Reson Chem       Date:  2011-07-12       Impact factor: 2.447

6.  The use of heteronuclear cross-polarization for backbone assignment of (2)H-, (15)N- and (13)C-labeled proteins: A pulse scheme for triple-resonance 4D correlation of sequential amide protons and (15)N.

Authors:  M Shirakawa; M Wälchli; M Shimizu; Y Kyogoku
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

7.  Full backbone assignment and dynamics of the intrinsically disordered dehydrin ERD14.

Authors:  Bianka Szalainé Ágoston; Dénes Kovács; Péter Tompa; András Perczel
Journal:  Biomol NMR Assign       Date:  2011-02-19       Impact factor: 0.746

8.  High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Hana Sanderová; Libor Krásný
Journal:  J Biomol NMR       Date:  2012-02-17       Impact factor: 2.835

9.  Heme impairs the ball-and-chain inactivation of potassium channels.

Authors:  Nirakar Sahoo; Nishit Goradia; Oliver Ohlenschläger; Roland Schönherr; Manfred Friedrich; Winfried Plass; Reinhard Kappl; Toshinori Hoshi; Stefan H Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

10.  In-cell NMR characterization of the secondary structure populations of a disordered conformation of α-synuclein within E. coli cells.

Authors:  Christopher A Waudby; Carlo Camilloni; Anthony W P Fitzpatrick; Lisa D Cabrita; Christopher M Dobson; Michele Vendruscolo; John Christodoulou
Journal:  PLoS One       Date:  2013-08-26       Impact factor: 3.240

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  1 in total

1.  Heme interaction of the intrinsically disordered N-terminal peptide segment of human cystathionine-β-synthase.

Authors:  Amit Kumar; Amelie Wißbrock; Nishit Goradia; Peter Bellstedt; Ramadurai Ramachandran; Diana Imhof; Oliver Ohlenschläger
Journal:  Sci Rep       Date:  2018-02-06       Impact factor: 4.379

  1 in total

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