Literature DB >> 20547466

Non-uniform frequency domain for optimal exploitation of non-uniform sampling.

Krzysztof Kazimierczuk1, Anna Zawadzka-Kazimierczuk, Wiktor Koźmiński.   

Abstract

Random sampling of NMR signal, not limited by Nyquist Theorem, yields up to thousands-fold gain in the experiment time required to obtain desired spectral resolution. Discrete Fourier transform (DFT), that can be used for processing of randomly sampled datasets, provides rarely exploited possibility to introduce irregular frequency domain. Here we demonstrate how this feature opens an avenue to NMR techniques of ultra-high resolution and dimensionality. We present the application of high resolution 5D experiments for protein backbone assignment and measurements of coupling constants from the 4D E.COSY multiplets. Spectral data acquired with the use of proposed techniques allow easy assignment of protein backbone resonances and precise determination of coupling constants. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20547466     DOI: 10.1016/j.jmr.2010.05.012

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  37 in total

1.  Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Authors:  Veronika Motáčková; Jiří Nováček; Anna Zawadzka-Kazimierczuk; Krzysztof Kazimierczuk; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2010-10-02       Impact factor: 2.835

2.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

3.  Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Authors:  Jiří Nováček; Lubomír Janda; Radka Dopitová; Lukáš Žídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2013-07-23       Impact factor: 2.835

4.  HN(CA)N and HN(COCA)N experiments for assignment of large disordered proteins.

Authors:  Xiao Liu; Daiwen Yang
Journal:  J Biomol NMR       Date:  2013-09-20       Impact factor: 2.835

5.  5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Authors:  Jiří Nováček; Anna Zawadzka-Kazimierczuk; Veronika Papoušková; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2011-03-20       Impact factor: 2.835

6.  Fast multi-dimensional NMR acquisition and processing using the sparse FFT.

Authors:  Haitham Hassanieh; Maxim Mayzel; Lixin Shi; Dina Katabi; Vladislav Yu Orekhov
Journal:  J Biomol NMR       Date:  2015-06-30       Impact factor: 2.835

7.  Multiple recognition motifs in nucleoporin Nup159 provide a stable and rigid Nup159-Dyn2 assembly.

Authors:  Afua Nyarko; Yujuan Song; Jiří Nováček; Lukáš Žídek; Elisar Barbar
Journal:  J Biol Chem       Date:  2012-12-08       Impact factor: 5.157

8.  TSAR: a program for automatic resonance assignment using 2D cross-sections of high dimensionality, high-resolution spectra.

Authors:  Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Martin Billeter
Journal:  J Biomol NMR       Date:  2012-07-18       Impact factor: 2.835

Review 9.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

10.  NMR determines transient structure and dynamics in the disordered C-terminal domain of WASp interacting protein.

Authors:  Noam Y Haba; Renana Gross; Jiri Novacek; Hadassa Shaked; Lukas Zidek; Mira Barda-Saad; Jordan H Chill
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

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