Literature DB >> 28890337

The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation.

Homa Ghalei1, Juliette Trepreau1, Jason C Collins1, Hari Bhaskaran1, Bethany S Strunk1, Katrin Karbstein2.   

Abstract

Late in their maturation, nascent small (40S) ribosomal subunits bind 60S subunits to produce 80S-like ribosomes. Because of the analogy of this translation-like cycle to actual translation, and because 80S-like ribosomes do not produce any protein, it has been suggested that this represents a quality control mechanism for subunit functionality. Here we use genetic and biochemical experiments to show that the essential ATPase Fap7 promotes formation of the rotated state, a key intermediate in translocation, thereby releasing the essential assembly factor Dim1 from pre-40S subunits. Bypassing this quality control step produces defects in reading frame maintenance. These results show how progress in the maturation cascade is linked to a test for a key functionality of 40S ribosomes: their ability to translocate the mRNA⋅tRNA pair. Furthermore, our data demonstrate for the first time that the translation-like cycle is a quality control mechanism that ensures the fidelity of the cellular ribosome pool.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  80S-like ribosome; Dim1; Fap7; quality control; ribosome assembly; translocation

Mesh:

Substances:

Year:  2017        PMID: 28890337      PMCID: PMC6192259          DOI: 10.1016/j.molcel.2017.08.007

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  61 in total

1.  A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.

Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

2.  The putative NTPase Fap7 mediates cytoplasmic 20S pre-rRNA processing through a direct interaction with Rps14.

Authors:  Sander Granneman; Madhusudan R Nandineni; Susan J Baserga
Journal:  Mol Cell Biol       Date:  2005-12       Impact factor: 4.272

3.  Structural Heterogeneity in Pre-40S Ribosomes.

Authors:  Matthew C Johnson; Homa Ghalei; Katelyn A Doxtader; Katrin Karbstein; M Elizabeth Stroupe
Journal:  Structure       Date:  2017-01-19       Impact factor: 5.006

4.  Decreased peptidyltransferase activity correlates with increased programmed -1 ribosomal frameshifting and viral maintenance defects in the yeast Saccharomyces cerevisiae.

Authors:  Arturas Meskauskas; Jason W Harger; Kristi L Muldoon Jacobs; Jonathan D Dinman
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

5.  Reconstitution of yeast translation initiation.

Authors:  Michael G Acker; Sarah E Kolitz; Sarah F Mitchell; Jagpreet S Nanda; Jon R Lorsch
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

6.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

7.  Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome.

Authors:  Israel S Fernández; Xiao-Chen Bai; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Cell       Date:  2014-05-01       Impact factor: 41.582

Review 8.  Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting.

Authors:  Neva Caliskan; Frank Peske; Marina V Rodnina
Journal:  Trends Biochem Sci       Date:  2015-04-04       Impact factor: 13.807

9.  Methylation of yeast ribosomal protein Rpl3 promotes translational elongation fidelity.

Authors:  Qais Al-Hadid; Kevin Roy; Guillaume Chanfreau; Steven G Clarke
Journal:  RNA       Date:  2016-01-29       Impact factor: 4.942

Review 10.  Ribosomal frameshifting in yeast viruses.

Authors:  J D Dinman
Journal:  Yeast       Date:  1995-09-30       Impact factor: 3.239

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  21 in total

Review 1.  Roles of elusive translational GTPases come to light and inform on the process of ribosome biogenesis in bacteria.

Authors:  Michelle R Gibbs; Kurt Fredrick
Journal:  Mol Microbiol       Date:  2017-12-29       Impact factor: 3.501

2.  Role of the 40S beak ribosomal protein eS12 in ribosome biogenesis and function in Saccharomyces cerevisiae.

Authors:  Sara Martín-Villanueva; José Fernández-Fernández; Olga Rodríguez-Galán; Julia Fernández-Boraita; Eduardo Villalobo; Jesús de La Cruz
Journal:  RNA Biol       Date:  2020-06-07       Impact factor: 4.652

3.  Structural and catalytic roles of the human 18S rRNA methyltransferases DIMT1 in ribosome assembly and translation.

Authors:  Hui Shen; Julian Stoute; Kathy Fange Liu
Journal:  J Biol Chem       Date:  2020-07-02       Impact factor: 5.157

4.  The modifying enzyme Tsr3 establishes the hierarchy of Rio kinase binding in 40S ribosome assembly.

Authors:  Haina Huang; Melissa Parker; Katrin Karbstein
Journal:  RNA       Date:  2022-01-14       Impact factor: 4.942

5.  CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations.

Authors:  Yu Zhao; Jay Rai; Hongguo Yu; Hong Li
Journal:  Structure       Date:  2022-04-29       Impact factor: 5.871

Review 6.  Ribosome assembly coming into focus.

Authors:  Sebastian Klinge; John L Woolford
Journal:  Nat Rev Mol Cell Biol       Date:  2019-02       Impact factor: 94.444

7.  Assembly factors chaperone ribosomal RNA folding by isolating helical junctions that are prone to misfolding.

Authors:  Haina Huang; Katrin Karbstein
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

Review 8.  Assembly of the small ribosomal subunit in yeast: mechanism and regulation.

Authors:  Malik Chaker-Margot
Journal:  RNA       Date:  2018-04-30       Impact factor: 4.942

Review 9.  The Nucleolus: A Multiphase Condensate Balancing Ribosome Synthesis and Translational Capacity in Health, Aging and Ribosomopathies.

Authors:  Carl C Correll; Jiri Bartek; Miroslav Dundr
Journal:  Cells       Date:  2019-08-10       Impact factor: 6.600

10.  Ribosome biogenesis factor Ltv1 chaperones the assembly of the small subunit head.

Authors:  Jason C Collins; Homa Ghalei; Joanne R Doherty; Haina Huang; Rebecca N Culver; Katrin Karbstein
Journal:  J Cell Biol       Date:  2018-10-22       Impact factor: 10.539

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