Literature DB >> 26999556

Choreography of molecular movements during ribosome progression along mRNA.

Riccardo Belardinelli1, Heena Sharma1, Neva Caliskan1, Carlos E Cunha1, Frank Peske1, Wolfgang Wintermeyer1, Marina V Rodnina1.   

Abstract

During translation elongation, ribosome translocation along an mRNA entails rotations of the ribosomal subunits, swiveling motions of the small subunit (SSU) head and stepwise movements of the tRNAs together with the mRNA. Here, we reconstructed the choreography of the collective motions of the Escherichia coli ribosome during translocation promoted by elongation factor EF-G, by recording the fluorescence signatures of nine different reporters placed on both ribosomal subunits, tRNA and mRNA. We captured an early forward swiveling of the SSU head taking place while the SSU body rotates in the opposite, clockwise direction. Backward swiveling of the SSU head starts upon tRNA translocation and continues until the post-translocation state is reached. This work places structures of translocation intermediates along a time axis and unravels principles of the motions of macromolecular machines.

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Year:  2016        PMID: 26999556     DOI: 10.1038/nsmb.3193

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  46 in total

1.  Measurement of internal movements within the 30 S ribosomal subunit using Förster resonance energy transfer.

Authors:  Robyn Hickerson; Zigurts K Majumdar; Albion Baucom; Robert M Clegg; Harry F Noller
Journal:  J Mol Biol       Date:  2005-10-06       Impact factor: 5.469

2.  Measurements of internal distance changes of the 30S ribosome using FRET with multiple donor-acceptor pairs: quantitative spectroscopic methods.

Authors:  Zigurts K Majumdar; Robyn Hickerson; Harry F Noller; Robert M Clegg
Journal:  J Mol Biol       Date:  2005-09-02       Impact factor: 5.469

3.  Energy barriers and driving forces in tRNA translocation through the ribosome.

Authors:  Lars V Bock; Christian Blau; Gunnar F Schröder; Iakov I Davydov; Niels Fischer; Holger Stark; Marina V Rodnina; Andrea C Vaiana; Helmut Grubmüller
Journal:  Nat Struct Mol Biol       Date:  2013-11-03       Impact factor: 15.369

Review 4.  Fitting enzyme kinetic data with KinTek Global Kinetic Explorer.

Authors:  Kenneth A Johnson
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

5.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

6.  A monovalent cation acts as structural and catalytic cofactor in translational GTPases.

Authors:  Bernhard Kuhle; Ralf Ficner
Journal:  EMBO J       Date:  2014-09-15       Impact factor: 11.598

7.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

8.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

9.  The antibiotic viomycin traps the ribosome in an intermediate state of translocation.

Authors:  Dmitri N Ermolenko; P Clint Spiegel; Zigurts K Majumdar; Robyn P Hickerson; Robert M Clegg; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2007-05-21       Impact factor: 15.369

10.  mRNA translocation occurs during the second step of ribosomal intersubunit rotation.

Authors:  Dmitri N Ermolenko; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2011-03-13       Impact factor: 15.369

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  35 in total

1.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

2.  A tandem active site model for the ribosomal helicase.

Authors:  Hossein Amiri; Harry F Noller
Journal:  FEBS Lett       Date:  2019-04-24       Impact factor: 4.124

3.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

4.  Translocation: lights, camera, and action.

Authors:  Xinying Shi; Simpson Joseph
Journal:  Nat Struct Mol Biol       Date:  2016-05-04       Impact factor: 15.369

Review 5.  The ribosome in action: Tuning of translational efficiency and protein folding.

Authors:  Marina V Rodnina
Journal:  Protein Sci       Date:  2016-06-08       Impact factor: 6.725

6.  Co-temporal Force and Fluorescence Measurements Reveal a Ribosomal Gear Shift Mechanism of Translation Regulation by Structured mRNAs.

Authors:  Varsha P Desai; Filipp Frank; Antony Lee; Maurizio Righini; Laura Lancaster; Harry F Noller; Ignacio Tinoco; Carlos Bustamante
Journal:  Mol Cell       Date:  2019-08-27       Impact factor: 17.970

7.  The structural basis for inhibition of ribosomal translocation by viomycin.

Authors:  Ling Zhang; Ying-Hui Wang; Xing Zhang; Laura Lancaster; Jie Zhou; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-27       Impact factor: 11.205

8.  tRNA Fluctuations Observed on Stalled Ribosomes Are Suppressed during Ongoing Protein Synthesis.

Authors:  Ryan M Jamiolkowski; Chunlai Chen; Barry S Cooperman; Yale E Goldman
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

9.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

10.  Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.

Authors:  Yan Zhang; Samuel Hong; Ajchareeya Ruangprasert; Georgios Skiniotis; Christine M Dunham
Journal:  Structure       Date:  2018-02-15       Impact factor: 5.006

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