Literature DB >> 24526980

2,4-Di-chloro-N-[eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]benzamide.

Bohari M Yamin1, Suhaila Sapari1, Siti Aishah Hasbullah1.   

Abstract

In the title compound, C12H14Cl2N2O2S, the mol-ecule adopts a cis conformation with respect to the di-chloro-benzoyl group against the thiono group about the C-N bond. However, the di-chloro-benzene group and the thio-urea moiety are twisted by 75.41 (8)°. An intra-molecular N-H⋯O hydrogen bond occurs between the amido H atom and hydroxyl O atom. In the crystal, O-H⋯S and O-H⋯O hydrogen bonds link the molecules, forming chains along the b-axis direction.

Entities:  

Year:  2013        PMID: 24526980      PMCID: PMC3914078          DOI: 10.1107/S1600536813032881

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures of thio­urea derivatives, see: Hassan et al. (2010 ▶); Nasir et al. (2011 ▶); Al-abbasi et al. (2012 ▶); Yamin et al. (2013 ▶).

Experimental

Crystal data

C12H14Cl2N2O2S M = 321.21 Monoclinic, a = 6.9712 (4) Å b = 10.6989 (6) Å c = 19.3288 (10) Å β = 96.441 (2)° V = 1432.52 (14) Å3 Z = 4 Mo Kα radiation μ = 0.60 mm−1 T = 300 K 0.50 × 0.40 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.754, T max = 0.900 30240 measured reflections 2967 independent reflections 2619 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.126 S = 1.16 2967 reflections 176 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker,2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813032881/rn2121sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032881/rn2121Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813032881/rn2121Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H14Cl2N2O2SF(000) = 664
Mr = 321.21Dx = 1.489 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 18947 reflections
a = 6.9712 (4) Åθ = 2.8–26.5°
b = 10.6989 (6) ŵ = 0.60 mm1
c = 19.3288 (10) ÅT = 300 K
β = 96.441 (2)°Block, colourless
V = 1432.52 (14) Å30.50 × 0.40 × 0.18 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2967 independent reflections
Radiation source: fine-focus sealed tube2619 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 83.66 pixels mm-1θmax = 26.5°, θmin = 2.8°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→13
Tmin = 0.754, Tmax = 0.900l = −24→24
30240 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0666P)2 + 0.6739P] where P = (Fo2 + 2Fc2)/3
2967 reflections(Δ/σ)max = 0.002
176 parametersΔρmax = 0.44 e Å3
1 restraintΔρmin = −0.36 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.89241 (10)0.71322 (6)0.93151 (4)0.0554 (2)
Cl20.70111 (8)1.08652 (6)1.09352 (3)0.04474 (18)
S10.75350 (9)0.90835 (6)0.64182 (3)0.04555 (19)
O10.7295 (4)0.8000 (2)0.78711 (10)0.0845 (9)
O21.0855 (3)1.20198 (15)0.81005 (9)0.0448 (4)
N10.9083 (3)0.97467 (17)0.77030 (9)0.0367 (4)
H1A0.97421.03160.79370.044*
N21.0766 (3)1.03352 (17)0.68075 (9)0.0336 (4)
C10.8163 (3)0.8659 (2)0.93868 (12)0.0347 (5)
C20.7904 (3)0.9090 (2)1.00426 (11)0.0341 (5)
H2B0.80900.85641.04270.041*
C30.7364 (3)1.0320 (2)1.01142 (11)0.0331 (4)
C40.7097 (3)1.1128 (2)0.95552 (12)0.0383 (5)
H4A0.67441.19560.96160.046*
C50.7369 (3)1.0677 (2)0.89040 (12)0.0389 (5)
H5A0.71981.12110.85230.047*
C60.7895 (3)0.9437 (2)0.88045 (11)0.0348 (5)
C70.8036 (4)0.8964 (2)0.80809 (12)0.0446 (6)
C80.9215 (3)0.97372 (19)0.69876 (11)0.0322 (4)
C91.0983 (4)1.0593 (2)0.60741 (11)0.0422 (5)
H9A1.16511.13820.60430.051*
H9B0.97121.06770.58170.051*
C101.2073 (4)0.9592 (3)0.57421 (14)0.0611 (8)
H10A1.21710.98080.52650.092*
H10B1.14040.88110.57610.092*
H10C1.33440.95160.59870.092*
C111.2412 (3)1.0729 (2)0.73058 (12)0.0409 (5)
H11A1.35761.07000.70740.049*
H11B1.25661.01340.76870.049*
C121.2214 (4)1.2026 (2)0.76032 (14)0.0524 (6)
H12A1.34591.23060.78240.063*
H12B1.17921.26040.72300.063*
H2A1.000 (4)1.253 (3)0.8004 (19)0.081 (12)*
U11U22U33U12U13U23
Cl10.0691 (4)0.0333 (3)0.0679 (4)−0.0079 (3)0.0262 (3)−0.0030 (3)
Cl20.0400 (3)0.0580 (4)0.0379 (3)−0.0032 (2)0.0114 (2)−0.0079 (2)
S10.0486 (4)0.0481 (4)0.0379 (3)−0.0119 (3)−0.0042 (3)−0.0043 (2)
O10.134 (2)0.0746 (15)0.0452 (11)−0.0699 (15)0.0110 (12)−0.0104 (10)
O20.0520 (10)0.0357 (9)0.0459 (9)0.0000 (7)0.0017 (8)−0.0053 (7)
N10.0424 (10)0.0378 (10)0.0308 (9)−0.0154 (8)0.0083 (7)−0.0074 (7)
N20.0371 (9)0.0357 (9)0.0283 (9)−0.0033 (7)0.0053 (7)−0.0009 (7)
C10.0263 (9)0.0346 (11)0.0446 (12)−0.0094 (8)0.0101 (8)−0.0020 (9)
C20.0248 (9)0.0414 (12)0.0366 (11)−0.0071 (8)0.0059 (8)0.0043 (9)
C30.0216 (9)0.0454 (12)0.0329 (10)−0.0039 (8)0.0061 (7)−0.0021 (9)
C40.0310 (10)0.0399 (12)0.0451 (12)0.0016 (9)0.0090 (9)0.0016 (9)
C50.0321 (11)0.0462 (13)0.0390 (12)−0.0038 (9)0.0065 (9)0.0078 (9)
C60.0275 (9)0.0429 (12)0.0349 (11)−0.0120 (8)0.0072 (8)−0.0015 (9)
C70.0516 (13)0.0450 (13)0.0378 (12)−0.0214 (11)0.0077 (10)−0.0044 (10)
C80.0383 (11)0.0268 (10)0.0316 (10)0.0000 (8)0.0047 (8)−0.0035 (8)
C90.0478 (13)0.0489 (13)0.0306 (11)−0.0012 (10)0.0070 (9)0.0062 (9)
C100.0576 (16)0.087 (2)0.0398 (13)0.0117 (15)0.0123 (12)−0.0085 (14)
C110.0362 (11)0.0508 (13)0.0362 (11)−0.0079 (10)0.0064 (9)−0.0002 (10)
C120.0644 (16)0.0461 (14)0.0464 (14)−0.0239 (12)0.0055 (12)−0.0024 (11)
Cl1—C11.728 (2)C4—C51.381 (3)
Cl2—C31.734 (2)C4—H4A0.9300
S1—C81.668 (2)C5—C61.395 (3)
O1—C71.203 (3)C5—H5A0.9300
O2—C121.423 (3)C6—C71.501 (3)
O2—H2A0.815 (10)C9—C101.498 (4)
N1—C71.374 (3)C9—H9A0.9700
N1—C81.396 (3)C9—H9B0.9700
N1—H1A0.8600C10—H10A0.9600
N2—C81.336 (3)C10—H10B0.9600
N2—C91.468 (3)C10—H10C0.9600
N2—C111.474 (3)C11—C121.514 (4)
C1—C21.380 (3)C11—H11A0.9700
C1—C61.395 (3)C11—H11B0.9700
C2—C31.380 (3)C12—H12A0.9700
C2—H2B0.9300C12—H12B0.9700
C3—C41.380 (3)
C12—O2—H2A112 (3)N2—C8—N1113.57 (17)
C7—N1—C8128.33 (18)N2—C8—S1123.90 (16)
C7—N1—H1A115.8N1—C8—S1122.48 (16)
C8—N1—H1A115.8N2—C9—C10113.0 (2)
C8—N2—C9121.02 (18)N2—C9—H9A109.0
C8—N2—C11124.05 (17)C10—C9—H9A109.0
C9—N2—C11114.86 (17)N2—C9—H9B109.0
C2—C1—C6121.5 (2)C10—C9—H9B109.0
C2—C1—Cl1117.57 (17)H9A—C9—H9B107.8
C6—C1—Cl1120.91 (17)C9—C10—H10A109.5
C1—C2—C3118.5 (2)C9—C10—H10B109.5
C1—C2—H2B120.8H10A—C10—H10B109.5
C3—C2—H2B120.8C9—C10—H10C109.5
C2—C3—C4122.2 (2)H10A—C10—H10C109.5
C2—C3—Cl2118.74 (16)H10B—C10—H10C109.5
C4—C3—Cl2119.03 (17)N2—C11—C12114.4 (2)
C3—C4—C5118.3 (2)N2—C11—H11A108.7
C3—C4—H4A120.8C12—C11—H11A108.7
C5—C4—H4A120.8N2—C11—H11B108.7
C4—C5—C6121.6 (2)C12—C11—H11B108.7
C4—C5—H5A119.2H11A—C11—H11B107.6
C6—C5—H5A119.2O2—C12—C11110.37 (19)
C1—C6—C5118.0 (2)O2—C12—H12A109.6
C1—C6—C7122.3 (2)C11—C12—H12A109.6
C5—C6—C7119.6 (2)O2—C12—H12B109.6
O1—C7—N1125.2 (2)C11—C12—H12B109.6
O1—C7—C6122.2 (2)H12A—C12—H12B108.1
N1—C7—C6112.59 (18)
C6—C1—C2—C30.2 (3)C1—C6—C7—O144.6 (4)
Cl1—C1—C2—C3177.72 (15)C5—C6—C7—O1−131.6 (3)
C1—C2—C3—C4−0.7 (3)C1—C6—C7—N1−135.5 (2)
C1—C2—C3—Cl2179.34 (15)C5—C6—C7—N148.4 (3)
C2—C3—C4—C50.6 (3)C9—N2—C8—N1−170.21 (19)
Cl2—C3—C4—C5−179.50 (16)C11—N2—C8—N112.9 (3)
C3—C4—C5—C60.2 (3)C9—N2—C8—S17.5 (3)
C2—C1—C6—C50.5 (3)C11—N2—C8—S1−169.33 (17)
Cl1—C1—C6—C5−176.96 (15)C7—N1—C8—N2−160.2 (2)
C2—C1—C6—C7−175.70 (19)C7—N1—C8—S122.0 (3)
Cl1—C1—C6—C76.8 (3)C8—N2—C9—C10−92.3 (3)
C4—C5—C6—C1−0.7 (3)C11—N2—C9—C1084.8 (3)
C4—C5—C6—C7175.6 (2)C8—N2—C11—C12−89.9 (3)
C8—N1—C7—O113.0 (5)C9—N2—C11—C1293.1 (2)
C8—N1—C7—C6−167.0 (2)N2—C11—C12—O274.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.861.992.796 (3)155
C9—H9B···S10.972.643.031 (3)105
O2—H2A···S1i0.81 (3)2.75 (3)3.438 (2)143 (3)
O2—H2A···O1i0.81 (3)2.25 (3)2.920 (3)140 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O20.861.992.796 (3)155
O2—H2A⋯S1i 0.81 (3)2.75 (3)3.438 (2)143 (3)
O2—H2A⋯O1i 0.81 (3)2.25 (3)2.920 (3)140 (3)

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

3.  1,1-Dibenzyl-3-(4-fluoro-benzo-yl)thio-urea.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

4.  N-(Pyrrolidin-1-ylcarbothio-yl)benzamide.

Authors:  Aisha A Al-Abbasi; Mohamed Ibrahim Mohamed Tahir; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  3-Chloro-N-[N-(furan-2-carbon-yl)hydrazinocarbo-thio-yl]benzamide.

Authors:  Bohari M Yamin; Diyana Yusof; Siti Aishah Hasbullah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-21
  6 in total
  1 in total

1.  N-[Eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]-3-fluoro-benzamide.

Authors:  Nor Wahida Awang; Siti Aishah Hasbullah; Siti Fairus M Yusoff; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-18
  1 in total

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