Literature DB >> 22259482

N-(Pyrrolidin-1-ylcarbothio-yl)benzamide.

Aisha A Al-Abbasi, Mohamed Ibrahim Mohamed Tahir, Mohammad B Kassim.   

Abstract

In the title compound, C(12)H(14)N(2)OS, the pyrrolidine ring adopts an envelope conformation with the C atom at the 3-position as the flap and makes a dihedral angle of 65.80 (9)° with the benzene ring. In the crystal, N-H⋯O hydrogen bonds join c-glide related mol-ecules into chains extended along [001] that are further connected into (100) layers via C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 22259482      PMCID: PMC3254535          DOI: 10.1107/S1600536811053694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, their structural parameters and chemical properties, see: Al-abbasi et al. (2010 ▶, 2011 ▶); Al-abbasi & Kassim (2011 ▶); Ngah et al. (2006 ▶).

Experimental

Crystal data

C12H14N2OS M = 234.31 Monoclinic, a = 10.3666 (4) Å b = 14.6008 (5) Å c = 7.8240 (3) Å β = 98.446 (4)° V = 1171.40 (8) Å3 Z = 4 Cu Kα radiation μ = 2.29 mm−1 T = 150 K 0.13 × 0.06 × 0.03 mm

Data collection

Oxford Diffraction Gemini area-detector diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.870, T max = 0.934 8077 measured reflections 2245 independent reflections 1958 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.03 2245 reflections 145 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053694/gk2440sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053694/gk2440Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053694/gk2440Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2OSF(000) = 496
Mr = 234.31Dx = 1.329 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 3639 reflections
a = 10.3666 (4) Åθ = 4–71.2°
b = 14.6008 (5) ŵ = 2.29 mm1
c = 7.8240 (3) ÅT = 150 K
β = 98.446 (4)°Needle, colourless
V = 1171.40 (8) Å30.13 × 0.06 × 0.03 mm
Z = 4
Oxford Diffraction Gemini area-detector diffractometer2245 independent reflections
Radiation source: fine-focus sealed tube1958 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 0 pixels mm-1θmax = 71.2°, θmin = 4.3°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −17→17
Tmin = 0.870, Tmax = 0.934l = −9→9
8077 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0577P)2 + 0.4389P] where P = (Fo2 + 2Fc2)/3
2245 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.(Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst., 105, 107.)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.07552 (4)0.14802 (3)0.15309 (5)0.02646 (15)
O10.19040 (11)0.34576 (8)0.07829 (14)0.0257 (3)
N10.10339 (13)0.27023 (9)0.28912 (17)0.0225 (3)
H10.12010.24720.39110.027*
N2−0.08955 (12)0.32949 (10)0.14768 (16)0.0221 (3)
C10.30423 (16)0.36102 (11)0.5288 (2)0.0258 (4)
H1A0.22280.36030.56510.031*
C20.41496 (17)0.38288 (13)0.6445 (2)0.0313 (4)
H20.40740.39810.75800.038*
C30.53634 (17)0.38203 (13)0.5908 (3)0.0340 (4)
H30.61040.39560.66900.041*
C40.54804 (17)0.36105 (13)0.4211 (3)0.0326 (4)
H40.63000.36010.38610.039*
C50.43831 (16)0.34158 (12)0.3035 (2)0.0288 (4)
H50.44590.32950.18870.035*
C60.31615 (15)0.34018 (11)0.3581 (2)0.0235 (3)
C70.19885 (15)0.31944 (11)0.2285 (2)0.0221 (3)
C8−0.02146 (15)0.25496 (11)0.19383 (19)0.0215 (3)
C9−0.22292 (15)0.32549 (12)0.0516 (2)0.0256 (3)
H9A−0.28070.29210.11620.031*
H9B−0.22360.2965−0.06000.031*
C10−0.26313 (17)0.42580 (13)0.0310 (2)0.0309 (4)
H10A−0.35560.43300.03510.037*
H10B−0.24340.4503−0.07750.037*
C11−0.18200 (16)0.47345 (12)0.1844 (2)0.0283 (4)
H11A−0.17260.53830.16210.034*
H11B−0.22100.46590.28890.034*
C12−0.05187 (16)0.42453 (11)0.1987 (2)0.0257 (4)
H12A0.00280.45110.12110.031*
H12B−0.00590.42680.31590.031*
U11U22U33U12U13U23
S10.0244 (2)0.0229 (2)0.0312 (2)−0.00252 (14)0.00082 (16)−0.00183 (14)
O10.0254 (6)0.0300 (6)0.0211 (6)−0.0026 (4)0.0011 (4)0.0003 (4)
N10.0208 (6)0.0272 (7)0.0182 (6)−0.0020 (5)−0.0012 (5)0.0017 (5)
N20.0204 (6)0.0237 (7)0.0214 (7)−0.0030 (5)0.0002 (5)−0.0005 (5)
C10.0241 (8)0.0263 (8)0.0263 (8)0.0006 (6)0.0014 (7)−0.0012 (6)
C20.0325 (9)0.0311 (9)0.0277 (9)0.0002 (7)−0.0039 (7)−0.0043 (7)
C30.0257 (9)0.0313 (9)0.0403 (10)−0.0018 (7)−0.0105 (7)−0.0024 (7)
C40.0205 (8)0.0323 (9)0.0447 (11)−0.0021 (7)0.0038 (7)−0.0001 (8)
C50.0249 (8)0.0317 (9)0.0296 (9)−0.0015 (6)0.0036 (7)−0.0018 (7)
C60.0220 (8)0.0224 (8)0.0250 (8)−0.0005 (6)−0.0003 (6)−0.0002 (6)
C70.0207 (7)0.0218 (8)0.0233 (8)0.0010 (6)0.0016 (6)−0.0024 (6)
C80.0212 (8)0.0263 (8)0.0173 (7)−0.0020 (6)0.0035 (6)0.0003 (6)
C90.0193 (8)0.0315 (9)0.0248 (8)−0.0027 (6)−0.0005 (6)−0.0012 (7)
C100.0250 (8)0.0330 (10)0.0330 (9)0.0022 (7)−0.0012 (7)0.0016 (7)
C110.0283 (8)0.0261 (9)0.0299 (8)0.0004 (6)0.0027 (7)0.0012 (7)
C120.0261 (8)0.0219 (8)0.0281 (8)−0.0030 (6)0.0001 (6)0.0002 (6)
S1—C81.6737 (16)C4—H40.9300
O1—C71.2275 (19)C5—C61.395 (2)
N1—C71.363 (2)C5—H50.9300
N1—C81.413 (2)C6—C71.496 (2)
N1—H10.8600C9—C101.525 (2)
N2—C81.318 (2)C9—H9A0.9700
N2—C91.4746 (19)C9—H9B0.9700
N2—C121.480 (2)C10—C111.528 (2)
C1—C21.391 (2)C10—H10A0.9700
C1—C61.392 (2)C10—H10B0.9700
C1—H1A0.9300C11—C121.516 (2)
C2—C31.384 (3)C11—H11A0.9700
C2—H20.9300C11—H11B0.9700
C3—C41.385 (3)C12—H12A0.9700
C3—H30.9300C12—H12B0.9700
C4—C51.384 (2)
C7—N1—C8123.71 (13)N2—C8—N1115.24 (14)
C7—N1—H1118.1N2—C8—S1124.55 (12)
C8—N1—H1118.1N1—C8—S1120.18 (12)
C8—N2—C9122.08 (14)N2—C9—C10103.72 (13)
C8—N2—C12126.18 (13)N2—C9—H9A111.0
C9—N2—C12111.41 (13)C10—C9—H9A111.0
C2—C1—C6119.56 (16)N2—C9—H9B111.0
C2—C1—H1A120.2C10—C9—H9B111.0
C6—C1—H1A120.2H9A—C9—H9B109.0
C3—C2—C1120.06 (17)C9—C10—C11104.10 (13)
C3—C2—H2120.0C9—C10—H10A110.9
C1—C2—H2120.0C11—C10—H10A110.9
C2—C3—C4120.29 (16)C9—C10—H10B110.9
C2—C3—H3119.9C11—C10—H10B110.9
C4—C3—H3119.9H10A—C10—H10B109.0
C5—C4—C3120.25 (17)C12—C11—C10102.97 (14)
C5—C4—H4119.9C12—C11—H11A111.2
C3—C4—H4119.9C10—C11—H11A111.2
C4—C5—C6119.58 (17)C12—C11—H11B111.2
C4—C5—H5120.2C10—C11—H11B111.2
C6—C5—H5120.2H11A—C11—H11B109.1
C1—C6—C5120.22 (15)N2—C12—C11103.01 (13)
C1—C6—C7121.10 (14)N2—C12—H12A111.2
C5—C6—C7118.64 (15)C11—C12—H12A111.2
O1—C7—N1123.00 (14)N2—C12—H12B111.2
O1—C7—C6121.50 (14)C11—C12—H12B111.2
N1—C7—C6115.49 (14)H12A—C12—H12B109.1
C6—C1—C2—C3−1.3 (3)C9—N2—C8—N1−178.38 (13)
C1—C2—C3—C41.2 (3)C12—N2—C8—N1−5.5 (2)
C2—C3—C4—C50.6 (3)C9—N2—C8—S1−0.6 (2)
C3—C4—C5—C6−2.1 (3)C12—N2—C8—S1172.25 (12)
C2—C1—C6—C5−0.3 (3)C7—N1—C8—N2−59.7 (2)
C2—C1—C6—C7−177.91 (15)C7—N1—C8—S1122.50 (15)
C4—C5—C6—C12.0 (3)C8—N2—C9—C10178.74 (14)
C4—C5—C6—C7179.69 (15)C12—N2—C9—C104.89 (17)
C8—N1—C7—O1−8.9 (2)N2—C9—C10—C11−26.57 (16)
C8—N1—C7—C6170.83 (14)C9—C10—C11—C1238.33 (17)
C1—C6—C7—O1142.08 (16)C8—N2—C12—C11−154.72 (15)
C5—C6—C7—O1−35.6 (2)C9—N2—C12—C1118.82 (17)
C1—C6—C7—N1−37.7 (2)C10—C11—C12—N2−34.56 (16)
C5—C6—C7—N1144.65 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.052.8637 (17)157
C11—H11A···O1ii0.972.523.339 (2)142
C12—H12A···O10.972.543.035 (2)112
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.052.8637 (17)157
C11—H11A⋯O1ii0.972.523.339 (2)142

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-[(Piperidin-1-yl)carbothioyl]benz-amide.

Authors:  Aisha A Al-Abbasi; Mohd Ambar Yarmo; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

3.  1-Benzoyl-3-ethyl-3-phenyl-thio-urea.

Authors:  Aisha A Al-Abbasi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

4.  1-(4-Chloro-benzo-yl)-3-cyclo-hexyl-3-methyl-thio-urea.

Authors:  Aisha A Al-Abbasi; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  Crystal structure of 4-meth-oxy-N-[(pyrrolidin-1-yl)carbo-thio-yl]benzamide.

Authors:  Khairi Suhud; Lee Yook Heng; Siti Aishah Hasbullah; Musa Ahmad; Mohammad B Kassim
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-03-04

2.  Crystal structure of 4-meth-oxy-N-(piperidine-1-carbono-thio-yl)benzamide.

Authors:  Khairi Suhud; Siti Aishah Hasbullah; Musa Ahmad; Lee Yook Heng; Mohammad B Kassim
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-25

3.  2,4-Di-chloro-N-[eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]benzamide.

Authors:  Bohari M Yamin; Suhaila Sapari; Siti Aishah Hasbullah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-11
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.