| Literature DB >> 24098246 |
Bohari M Yamin1, Diyana Yusof, Siti Aishah Hasbullah.
Abstract
In the title compound C13H10ClN3O3S, the benzoyl group maintains its trans conformation against the thiono group about the C-N bond and the intra-molecular hydrogen bond between the benzoyl O atom and thio-amide H atom. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules, forming chains along the b-axis direction. In addition, C-H⋯π inter-actions occur between a phenyl H atom and the furan ring.Entities:
Year: 2013 PMID: 24098246 PMCID: PMC3790427 DOI: 10.1107/S1600536813025440
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10ClN3O3S | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1801 reflections |
| θ = 1.5–25.0° | |
| µ = 0.43 mm−1 | |
| Block, colourless | |
| 0.50 × 0.49 × 0.12 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 2507 independent reflections |
| Radiation source: fine-focus sealed tube | 1723 reflections with |
| Graphite monochromator | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 25.0°, θmin = 1.6° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 15224 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2507 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.98435 (14) | −0.08651 (5) | −0.18005 (3) | 0.0735 (3) | |
| O1 | 0.7448 (3) | 0.04610 (12) | −0.00613 (7) | 0.0591 (6) | |
| O2 | 0.6645 (3) | 0.25070 (11) | 0.08567 (7) | 0.0509 (5) | |
| O3 | 0.4281 (3) | 0.21465 (12) | 0.20364 (7) | 0.0509 (5) | |
| N1 | 0.7094 (3) | −0.06226 (13) | 0.05323 (8) | 0.0436 (6) | |
| H1A | 0.7296 | −0.1173 | 0.0592 | 0.052* | |
| N2 | 0.6422 (3) | 0.07378 (13) | 0.08781 (8) | 0.0419 (6) | |
| H2A | 0.6885 | 0.0964 | 0.0602 | 0.050* | |
| N3 | 0.5717 (3) | 0.12697 (13) | 0.12567 (9) | 0.0461 (6) | |
| H3A | 0.5170 | 0.1039 | 0.1519 | 0.055* | |
| C1 | 0.8615 (4) | −0.06793 (17) | −0.08220 (11) | 0.0436 (7) | |
| H1B | 0.8702 | −0.0074 | −0.0878 | 0.052* | |
| C2 | 0.9095 (4) | −0.12615 (18) | −0.12060 (11) | 0.0441 (7) | |
| C3 | 0.8981 (4) | −0.21559 (17) | −0.11338 (12) | 0.0474 (7) | |
| H3B | 0.9332 | −0.2543 | −0.1395 | 0.057* | |
| C4 | 0.8341 (5) | −0.24695 (18) | −0.06697 (12) | 0.0543 (8) | |
| H4A | 0.8249 | −0.3075 | −0.0618 | 0.065* | |
| C5 | 0.7834 (4) | −0.19013 (17) | −0.02794 (11) | 0.0510 (8) | |
| H5A | 0.7379 | −0.2123 | 0.0031 | 0.061* | |
| C6 | 0.8002 (4) | −0.09970 (16) | −0.03502 (10) | 0.0388 (6) | |
| C7 | 0.7507 (4) | −0.03252 (17) | 0.00457 (10) | 0.0418 (7) | |
| C8 | 0.6385 (4) | −0.01326 (16) | 0.09412 (10) | 0.0396 (6) | |
| C9 | 0.5875 (4) | 0.21534 (15) | 0.12203 (10) | 0.0356 (6) | |
| C10 | 0.5023 (4) | 0.26306 (16) | 0.16468 (9) | 0.0360 (6) | |
| C11 | 0.4757 (4) | 0.34892 (18) | 0.17338 (12) | 0.0501 (8) | |
| H11A | 0.5155 | 0.3954 | 0.1527 | 0.060* | |
| C12 | 0.3764 (5) | 0.3558 (2) | 0.21962 (12) | 0.0593 (9) | |
| H12A | 0.3359 | 0.4075 | 0.2353 | 0.071* | |
| C13 | 0.3516 (5) | 0.2743 (2) | 0.23661 (12) | 0.0613 (9) | |
| H13A | 0.2902 | 0.2598 | 0.2670 | 0.074* | |
| S1 | 0.55517 (13) | −0.06141 (5) | 0.14664 (3) | 0.0566 (3) |
| Cl1 | 0.1084 (8) | 0.0531 (5) | 0.0589 (6) | −0.0122 (5) | 0.0308 (5) | −0.0102 (4) |
| O1 | 0.1014 (18) | 0.0309 (11) | 0.0451 (12) | 0.0079 (10) | 0.0097 (11) | 0.0008 (9) |
| O2 | 0.0729 (15) | 0.0372 (10) | 0.0427 (11) | −0.0040 (9) | 0.0154 (10) | 0.0013 (9) |
| O3 | 0.0632 (14) | 0.0457 (11) | 0.0437 (12) | 0.0032 (9) | 0.0137 (10) | 0.0024 (9) |
| N1 | 0.0614 (16) | 0.0247 (11) | 0.0448 (14) | 0.0032 (10) | −0.0005 (11) | −0.0022 (10) |
| N2 | 0.0572 (15) | 0.0303 (11) | 0.0381 (13) | 0.0018 (10) | 0.0081 (11) | −0.0017 (10) |
| N3 | 0.0648 (17) | 0.0317 (12) | 0.0416 (13) | 0.0010 (11) | 0.0137 (12) | −0.0021 (10) |
| C1 | 0.0508 (18) | 0.0302 (13) | 0.0497 (18) | −0.0015 (12) | −0.0007 (14) | −0.0064 (12) |
| C2 | 0.0432 (17) | 0.0421 (15) | 0.0469 (17) | −0.0036 (13) | 0.0029 (13) | −0.0076 (13) |
| C3 | 0.0535 (19) | 0.0373 (15) | 0.0512 (18) | 0.0082 (13) | −0.0081 (15) | −0.0126 (13) |
| C4 | 0.080 (2) | 0.0290 (14) | 0.0535 (18) | 0.0094 (14) | −0.0144 (16) | −0.0050 (13) |
| C5 | 0.076 (2) | 0.0367 (16) | 0.0406 (17) | 0.0027 (14) | −0.0108 (15) | 0.0022 (12) |
| C6 | 0.0464 (17) | 0.0300 (14) | 0.0401 (15) | 0.0044 (11) | −0.0074 (13) | −0.0023 (11) |
| C7 | 0.0494 (17) | 0.0344 (15) | 0.0417 (17) | 0.0026 (12) | −0.0064 (13) | −0.0021 (12) |
| C8 | 0.0437 (16) | 0.0315 (14) | 0.0436 (16) | 0.0001 (12) | −0.0046 (13) | −0.0033 (12) |
| C9 | 0.0396 (16) | 0.0306 (14) | 0.0365 (15) | 0.0007 (11) | −0.0035 (12) | 0.0001 (11) |
| C10 | 0.0396 (16) | 0.0354 (13) | 0.0329 (14) | −0.0010 (12) | −0.0013 (12) | 0.0003 (11) |
| C11 | 0.065 (2) | 0.0369 (15) | 0.0489 (18) | 0.0036 (14) | 0.0038 (15) | −0.0045 (13) |
| C12 | 0.072 (2) | 0.0511 (19) | 0.055 (2) | 0.0136 (16) | 0.0045 (17) | −0.0165 (16) |
| C13 | 0.062 (2) | 0.076 (2) | 0.0457 (18) | 0.0112 (18) | 0.0154 (16) | −0.0076 (16) |
| S1 | 0.0856 (6) | 0.0331 (4) | 0.0513 (5) | −0.0044 (4) | 0.0144 (4) | 0.0026 (3) |
| Cl1—C2 | 1.737 (3) | C2—C3 | 1.370 (4) |
| O1—C7 | 1.223 (3) | C3—C4 | 1.372 (4) |
| O2—C9 | 1.219 (3) | C3—H3B | 0.9300 |
| O3—C10 | 1.358 (3) | C4—C5 | 1.376 (4) |
| O3—C13 | 1.362 (3) | C4—H4A | 0.9300 |
| N1—C7 | 1.369 (3) | C5—C6 | 1.388 (4) |
| N1—C8 | 1.391 (3) | C5—H5A | 0.9300 |
| N1—H1A | 0.8600 | C6—C7 | 1.488 (4) |
| N2—C8 | 1.329 (3) | C8—S1 | 1.656 (3) |
| N2—N3 | 1.368 (3) | C9—C10 | 1.457 (3) |
| N2—H2A | 0.8600 | C10—C11 | 1.334 (4) |
| N3—C9 | 1.347 (3) | C11—C12 | 1.401 (4) |
| N3—H3A | 0.8600 | C11—H11A | 0.9300 |
| C1—C2 | 1.373 (4) | C12—C13 | 1.322 (4) |
| C1—C6 | 1.385 (4) | C12—H12A | 0.9300 |
| C1—H1B | 0.9300 | C13—H13A | 0.9300 |
| C10—O3—C13 | 105.6 (2) | C1—C6—C5 | 119.2 (2) |
| C7—N1—C8 | 127.1 (2) | C1—C6—C7 | 116.5 (2) |
| C7—N1—H1A | 116.4 | C5—C6—C7 | 124.3 (3) |
| C8—N1—H1A | 116.4 | O1—C7—N1 | 121.4 (2) |
| C8—N2—N3 | 119.3 (2) | O1—C7—C6 | 121.3 (3) |
| C8—N2—H2A | 120.4 | N1—C7—C6 | 117.4 (2) |
| N3—N2—H2A | 120.4 | N2—C8—N1 | 115.4 (2) |
| C9—N3—N2 | 120.2 (2) | N2—C8—S1 | 123.0 (2) |
| C9—N3—H3A | 119.9 | N1—C8—S1 | 121.59 (18) |
| N2—N3—H3A | 119.9 | O2—C9—N3 | 122.0 (2) |
| C2—C1—C6 | 119.7 (2) | O2—C9—C10 | 124.2 (2) |
| C2—C1—H1B | 120.2 | N3—C9—C10 | 113.8 (2) |
| C6—C1—H1B | 120.2 | C11—C10—O3 | 110.1 (2) |
| C3—C2—C1 | 121.4 (3) | C11—C10—C9 | 132.3 (2) |
| C3—C2—Cl1 | 118.8 (2) | O3—C10—C9 | 117.5 (2) |
| C1—C2—Cl1 | 119.8 (2) | C10—C11—C12 | 106.9 (3) |
| C2—C3—C4 | 118.8 (3) | C10—C11—H11A | 126.5 |
| C2—C3—H3B | 120.6 | C12—C11—H11A | 126.5 |
| C4—C3—H3B | 120.6 | C13—C12—C11 | 106.6 (3) |
| C3—C4—C5 | 121.0 (3) | C13—C12—H12A | 126.7 |
| C3—C4—H4A | 119.5 | C11—C12—H12A | 126.7 |
| C5—C4—H4A | 119.5 | C12—C13—O3 | 110.9 (3) |
| C4—C5—C6 | 119.8 (3) | C12—C13—H13A | 124.6 |
| C4—C5—H5A | 120.1 | O3—C13—H13A | 124.6 |
| C6—C5—H5A | 120.1 | ||
| C8—N2—N3—C9 | 174.6 (2) | N3—N2—C8—N1 | 178.7 (2) |
| C6—C1—C2—C3 | 0.0 (4) | N3—N2—C8—S1 | −1.2 (4) |
| C6—C1—C2—Cl1 | 179.4 (2) | C7—N1—C8—N2 | −12.8 (4) |
| C1—C2—C3—C4 | 1.2 (4) | C7—N1—C8—S1 | 167.1 (2) |
| Cl1—C2—C3—C4 | −178.2 (2) | N2—N3—C9—O2 | −0.3 (4) |
| C2—C3—C4—C5 | −0.6 (5) | N2—N3—C9—C10 | 178.8 (2) |
| C3—C4—C5—C6 | −1.3 (5) | C13—O3—C10—C11 | 0.9 (3) |
| C2—C1—C6—C5 | −1.8 (4) | C13—O3—C10—C9 | −177.3 (2) |
| C2—C1—C6—C7 | −179.9 (3) | O2—C9—C10—C11 | 5.0 (5) |
| C4—C5—C6—C1 | 2.5 (4) | N3—C9—C10—C11 | −174.1 (3) |
| C4—C5—C6—C7 | −179.6 (3) | O2—C9—C10—O3 | −177.3 (2) |
| C8—N1—C7—O1 | 7.6 (5) | N3—C9—C10—O3 | 3.6 (3) |
| C8—N1—C7—C6 | −171.5 (2) | O3—C10—C11—C12 | −1.2 (3) |
| C1—C6—C7—O1 | 8.0 (4) | C9—C10—C11—C12 | 176.6 (3) |
| C5—C6—C7—O1 | −170.0 (3) | C10—C11—C12—C13 | 1.1 (4) |
| C1—C6—C7—N1 | −172.9 (2) | C11—C12—C13—O3 | −0.5 (4) |
| C5—C6—C7—N1 | 9.1 (4) | C10—O3—C13—C12 | −0.2 (4) |
| H··· | ||||
| N2—H2 | 0.86 | 1.92 | 2.574 (3) | 132 |
| N1—H1 | 0.86 | 2.25 | 3.094 (3) | 167 |
| C5—H5 | 0.93 | 2.32 | 3.093 (4) | 140 |
| C13—H13 | 0.93 | 2.83 | 3.516 (4) | 132 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the furan ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.92 | 2.574 (3) | 132 |
| N1—H1 | 0.86 | 2.25 | 3.094 (3) | 167 |
| C5—H5 | 0.93 | 2.32 | 3.093 (4) | 140 |
| C13—H13 | 0.93 | 2.83 | 3.516 (4) | 132 |
Symmetry codes: (i) ; (ii) .