Literature DB >> 24860375

N-[Eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]-3-fluoro-benzamide.

Nor Wahida Awang1, Siti Aishah Hasbullah1, Siti Fairus M Yusoff1, Bohari M Yamin2.   

Abstract

In the title compound, C12H15FN2O2S, the mol-ecule adopts a cis configuration of the fluoro-benzoyl group with respect to the thiono group about their C-N bond. The dihedral angle between the fluoro-benzoyl group and the thio-urea N2CS fragment is 69.60 (11)°. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, mol-ecules form chains along the b-axis direction via O-H⋯S and C-H⋯O hydrogen bonds.

Entities:  

Year:  2014        PMID: 24860375      PMCID: PMC4011211          DOI: 10.1107/S1600536814008174

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond length data see: Allen et al. (1987 ▶). For a related structure, see: Yamin et al. (2014 ▶).

Experimental

Crystal data

C12H15FN2O2S M = 270.32 Orthorhombic, a = 6.0205 (3) Å b = 12.9441 (6) Å c = 17.1071 (9) Å V = 1333.16 (11) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.50 × 0.50 × 0.29 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.885, T max = 0.931 21708 measured reflections 3290 independent reflections 2864 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.086 S = 1.07 3290 reflections 168 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1378 Friedel pairs Absolute structure parameter: −0.05 (8) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814008174/bq2395sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008174/bq2395Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814008174/bq2395Isup3.cml CCDC reference: 996752 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H15FN2O2SF(000) = 568
Mr = 270.32Dx = 1.347 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 11689 reflections
a = 6.0205 (3) Åθ = 3.1–28.2°
b = 12.9441 (6) ŵ = 0.25 mm1
c = 17.1071 (9) ÅT = 296 K
V = 1333.16 (11) Å3Block, colorless
Z = 40.50 × 0.50 × 0.29 mm
Bruker SMART APEX CCD area-detector diffractometer3290 independent reflections
Radiation source: fine-focus sealed tube2864 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω scansθmax = 28.2°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −8→7
Tmin = 0.885, Tmax = 0.931k = −17→16
21708 measured reflectionsl = −21→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0367P)2 + 0.3143P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3290 reflectionsΔρmax = 0.22 e Å3
168 parametersΔρmin = −0.18 e Å3
1 restraintAbsolute structure: Flack (1983), 1378 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.05 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F1−0.5492 (2)0.22048 (12)0.06124 (8)0.0690 (4)
S10.25957 (10)0.08756 (4)0.35274 (3)0.05288 (15)
O10.2778 (3)0.02641 (9)0.17285 (8)0.0537 (4)
O20.0320 (2)0.39036 (10)0.21034 (9)0.0501 (3)
H2A−0.053 (3)0.4382 (14)0.2024 (14)0.067 (7)*
N10.1564 (2)0.18174 (10)0.21762 (8)0.0369 (3)
H1A0.08360.23590.20390.044*
N20.3727 (2)0.27479 (10)0.30261 (8)0.0360 (3)
C1−0.2089 (3)0.16654 (13)0.11163 (9)0.0382 (4)
H1−0.22280.21340.15260.046*
C2−0.3693 (3)0.15905 (16)0.05543 (10)0.0438 (4)
C3−0.3574 (4)0.09202 (19)−0.00610 (11)0.0556 (5)
H3−0.46980.0890−0.04330.067*
C4−0.1751 (4)0.02952 (18)−0.01123 (13)0.0625 (6)
H4−0.1633−0.0167−0.05260.075*
C5−0.0084 (4)0.03385 (15)0.04385 (11)0.0497 (5)
H50.1148−0.00910.03940.060*
C6−0.0245 (3)0.10242 (12)0.10612 (10)0.0341 (3)
C70.1516 (3)0.09866 (12)0.16784 (10)0.0349 (3)
C80.2701 (3)0.18551 (11)0.28899 (10)0.0348 (3)
C90.4712 (4)0.29815 (16)0.37932 (11)0.0546 (5)
H9A0.38840.26210.41960.066*
H9B0.45870.37170.38930.066*
C100.7126 (4)0.26688 (19)0.38404 (16)0.0765 (8)
H10A0.72590.19410.37430.115*
H10B0.76900.28230.43520.115*
H10C0.79640.30440.34560.115*
C110.4091 (3)0.35433 (13)0.24232 (10)0.0366 (4)
H11A0.41760.32110.19160.044*
H11B0.55050.38790.25200.044*
C120.2301 (4)0.43491 (12)0.24008 (11)0.0447 (4)
H12A0.20410.46150.29230.054*
H12B0.27600.49190.20700.054*
U11U22U33U12U13U23
F10.0511 (7)0.0961 (10)0.0598 (7)0.0225 (7)−0.0128 (6)−0.0004 (7)
S10.0634 (3)0.0408 (2)0.0544 (3)−0.0138 (2)−0.0199 (3)0.0157 (2)
O10.0596 (9)0.0393 (6)0.0622 (8)0.0182 (7)−0.0127 (7)−0.0037 (6)
O20.0487 (8)0.0337 (7)0.0677 (9)0.0113 (6)−0.0071 (7)−0.0017 (6)
N10.0404 (8)0.0252 (6)0.0451 (8)0.0027 (6)−0.0149 (6)0.0016 (6)
N20.0388 (8)0.0307 (7)0.0385 (7)−0.0034 (6)−0.0073 (6)−0.0005 (6)
C10.0421 (10)0.0422 (8)0.0301 (7)0.0018 (8)−0.0015 (7)−0.0009 (6)
C20.0367 (9)0.0559 (11)0.0389 (9)0.0023 (8)−0.0004 (8)0.0067 (8)
C30.0562 (12)0.0745 (14)0.0360 (9)−0.0134 (12)−0.0118 (9)0.0010 (10)
C40.0816 (17)0.0612 (13)0.0446 (11)−0.0042 (13)−0.0055 (11)−0.0176 (10)
C50.0578 (12)0.0452 (10)0.0460 (11)0.0046 (9)−0.0001 (9)−0.0088 (9)
C60.0377 (8)0.0304 (8)0.0343 (8)−0.0033 (7)−0.0008 (7)0.0019 (6)
C70.0355 (8)0.0278 (7)0.0413 (9)−0.0010 (7)−0.0014 (7)0.0033 (6)
C80.0304 (8)0.0315 (7)0.0427 (8)0.0003 (7)−0.0065 (7)0.0005 (6)
C90.0727 (14)0.0475 (11)0.0437 (10)−0.0147 (10)−0.0170 (10)−0.0025 (9)
C100.0724 (17)0.0650 (14)0.0920 (17)−0.0156 (13)−0.0453 (15)0.0178 (13)
C110.0368 (9)0.0304 (8)0.0425 (9)−0.0040 (7)−0.0002 (7)0.0001 (7)
C120.0554 (12)0.0275 (7)0.0512 (10)0.0047 (9)−0.0025 (10)−0.0039 (7)
F1—C21.347 (2)C4—C51.377 (3)
S1—C81.6736 (16)C4—H40.9300
O1—C71.208 (2)C5—C61.390 (2)
O2—C121.419 (2)C5—H50.9300
O2—H2A0.816 (10)C6—C71.497 (2)
N1—C71.372 (2)C9—C101.511 (3)
N1—C81.401 (2)C9—H9A0.9700
N1—H1A0.8600C9—H9B0.9700
N2—C81.331 (2)C10—H10A0.9600
N2—C91.471 (2)C10—H10B0.9600
N2—C111.474 (2)C10—H10C0.9600
C1—C21.366 (2)C11—C121.500 (3)
C1—C61.389 (2)C11—H11A0.9700
C1—H10.9300C11—H11B0.9700
C2—C31.366 (3)C12—H12A0.9700
C3—C41.366 (3)C12—H12B0.9700
C3—H30.9300
C12—O2—H2A106.3 (18)N2—C8—N1114.19 (13)
C7—N1—C8125.36 (13)N2—C8—S1124.15 (13)
C7—N1—H1A117.3N1—C8—S1121.54 (12)
C8—N1—H1A117.3N2—C9—C10112.35 (19)
C8—N2—C9121.44 (15)N2—C9—H9A109.1
C8—N2—C11123.58 (14)C10—C9—H9A109.1
C9—N2—C11114.88 (14)N2—C9—H9B109.1
C2—C1—C6118.34 (16)C10—C9—H9B109.1
C2—C1—H1120.8H9A—C9—H9B107.9
C6—C1—H1120.8C9—C10—H10A109.5
F1—C2—C3118.29 (17)C9—C10—H10B109.5
F1—C2—C1118.32 (16)H10A—C10—H10B109.5
C3—C2—C1123.38 (18)C9—C10—H10C109.5
C2—C3—C4117.89 (18)H10A—C10—H10C109.5
C2—C3—H3121.1H10B—C10—H10C109.5
C4—C3—H3121.1N2—C11—C12113.38 (15)
C3—C4—C5121.14 (19)N2—C11—H11A108.9
C3—C4—H4119.4C12—C11—H11A108.9
C5—C4—H4119.4N2—C11—H11B108.9
C4—C5—C6120.0 (2)C12—C11—H11B108.9
C4—C5—H5120.0H11A—C11—H11B107.7
C6—C5—H5120.0O2—C12—C11109.28 (13)
C1—C6—C5119.29 (16)O2—C12—H12A109.8
C1—C6—C7122.51 (15)C11—C12—H12A109.8
C5—C6—C7118.06 (16)O2—C12—H12B109.8
O1—C7—N1123.33 (15)C11—C12—H12B109.8
O1—C7—C6121.38 (15)H12A—C12—H12B108.3
N1—C7—C6115.29 (14)
C6—C1—C2—F1179.31 (16)C1—C6—C7—N1−18.5 (2)
C6—C1—C2—C3−0.2 (3)C5—C6—C7—N1165.87 (16)
F1—C2—C3—C4−179.56 (19)C9—N2—C8—N1170.60 (17)
C1—C2—C3—C40.0 (3)C11—N2—C8—N1−13.3 (2)
C2—C3—C4—C50.0 (3)C9—N2—C8—S1−5.4 (3)
C3—C4—C5—C60.2 (3)C11—N2—C8—S1170.74 (13)
C2—C1—C6—C50.5 (2)C7—N1—C8—N2139.06 (17)
C2—C1—C6—C7−175.11 (16)C7—N1—C8—S1−44.8 (2)
C4—C5—C6—C1−0.5 (3)C8—N2—C9—C1091.8 (2)
C4—C5—C6—C7175.31 (19)C11—N2—C9—C10−84.6 (2)
C8—N1—C7—O1−14.3 (3)C8—N2—C11—C1293.48 (19)
C8—N1—C7—C6165.10 (16)C9—N2—C11—C12−90.17 (19)
C1—C6—C7—O1160.93 (17)N2—C11—C12—O2−70.51 (19)
C5—C6—C7—O1−14.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.862.032.805 (2)150
C9—H9A···S10.972.653.043 (3)105
O2—H2A···S1i0.82 (3)2.49 (3)3.2805 (19)166 (3)
C11—H11B···O1ii0.972.443.259 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O20.862.032.805 (2)150
O2—H2A⋯S1i 0.82 (3)2.49 (3)3.2805 (19)166 (3)
C11—H11B⋯O1ii 0.972.443.259 (3)142

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

3.  2,4-Di-chloro-N-[eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]benzamide.

Authors:  Bohari M Yamin; Suhaila Sapari; Siti Aishah Hasbullah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-11
  3 in total

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