Literature DB >> 24524803

A new system for naming ribosomal proteins.

Nenad Ban1, Roland Beckmann2, Jamie H D Cate3, Jonathan D Dinman4, François Dragon5, Steven R Ellis6, Denis L J Lafontaine7, Lasse Lindahl8, Anders Liljas9, Jeffrey M Lipton10, Michael A McAlear11, Peter B Moore12, Harry F Noller13, Joaquin Ortega14, Vikram Govind Panse15, V Ramakrishnan16, Christian M T Spahn17, Thomas A Steitz18, Marek Tchorzewski19, David Tollervey20, Alan J Warren16, James R Williamson21, Daniel Wilson22, Ada Yonath23, Marat Yusupov24.   

Abstract

A system for naming ribosomal proteins is described that the authors intend to use in the future. They urge others to adopt it. The objective is to eliminate the confusion caused by the assignment of identical names to ribosomal proteins from different species that are unrelated in structure and function. In the system proposed here, homologous ribosomal proteins are assigned the same name, regardless of species. It is designed so that new names are similar enough to old names to be easily recognized, but are written in a format that unambiguously identifies them as 'new system' names.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24524803      PMCID: PMC4358319          DOI: 10.1016/j.sbi.2014.01.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

4.  Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6.

Authors:  Sebastian Klinge; Felix Voigts-Hoffmann; Marc Leibundgut; Sofia Arpagaus; Nenad Ban
Journal:  Science       Date:  2011-11-03       Impact factor: 47.728

5.  On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.

Authors:  Elie Desmond; Celine Brochier-Armanet; Patrick Forterre; Simonetta Gribaldo
Journal:  Res Microbiol       Date:  2010-10-27       Impact factor: 3.992

6.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

Review 7.  Structure and evolution of mammalian ribosomal proteins.

Authors:  I G Wool; Y L Chan; A Glück
Journal:  Biochem Cell Biol       Date:  1995 Nov-Dec       Impact factor: 3.626

8.  Correlation of 30S ribosomal proteins of Escherichia coli isolated in different laboratories.

Authors:  H G Wittmann; G Stöfflet; I Hindennach; C G Kurland; E A Birge; L Randall-Hazelbauer; M Nomura; E Kaltschmidt; S Mizushima; R R Traut; T A Bickle
Journal:  Mol Gen Genet       Date:  1971

9.  A new nomenclature for the cytoplasmic ribosomal proteins of Saccharomyces cerevisiae.

Authors:  W H Mager; R J Planta; J G Ballesta; J C Lee; K Mizuta; K Suzuki; J R Warner; J Woolford
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

10.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

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  258 in total

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Journal:  Nat Struct Mol Biol       Date:  2015-11-30       Impact factor: 15.369

Review 3.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

Review 4.  Eukaryote-specific extensions in ribosomal proteins of the small subunit: Structure and function.

Authors:  Arnab Ghosh; Anton A Komar
Journal:  Translation (Austin)       Date:  2015-02-05

Review 5.  Pathways to Specialized Ribosomes: The Brussels Lecture.

Authors:  Jonathan D Dinman
Journal:  J Mol Biol       Date:  2016-01-04       Impact factor: 5.469

Review 6.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

7.  Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.

Authors:  Ze Cheng; Christopher Frederick Mugler; Abdurrahman Keskin; Stefanie Hodapp; Leon Yen-Lee Chan; Karsten Weis; Philipp Mertins; Aviv Regev; Marko Jovanovic; Gloria Ann Brar
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

8.  Combined Effect of the Cfr Methyltransferase and Ribosomal Protein L3 Mutations on Resistance to Ribosome-Targeting Antibiotics.

Authors:  Kevin K Pakula; Lykke H Hansen; Birte Vester
Journal:  Antimicrob Agents Chemother       Date:  2017-08-24       Impact factor: 5.191

9.  Architecture of a transcribing-translating expressome.

Authors:  R Kohler; R A Mooney; D J Mills; R Landick; P Cramer
Journal:  Science       Date:  2017-04-14       Impact factor: 47.728

10.  Communication between RACK1/Asc1 and uS3 (Rps3) is essential for RACK1/Asc1 function in yeast Saccharomyces cerevisiae.

Authors:  Nishant Singh; Supriya Jindal; Arnab Ghosh; Anton A Komar
Journal:  Gene       Date:  2019-05-01       Impact factor: 3.688

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