Literature DB >> 28408604

Architecture of a transcribing-translating expressome.

R Kohler1, R A Mooney2, D J Mills3, R Landick4, P Cramer5.   

Abstract

DNA transcription is functionally coupled to messenger RNA (mRNA) translation in bacteria, but how this is achieved remains unclear. Here we show that RNA polymerase (RNAP) and the ribosome of Escherichia coli can form a defined transcribing and translating "expressome" complex. The cryo-electron microscopic structure of the expressome reveals continuous protection of ~30 nucleotides of mRNA extending from the RNAP active center to the ribosome decoding center. The RNAP-ribosome interface includes the RNAP subunit α carboxyl-terminal domain, which is required for RNAP-ribosome interaction in vitro and for pronounced cell growth defects upon translation inhibition in vivo, consistent with its function in transcription-translation coupling. The expressome structure can only form during transcription elongation and explains how translation can prevent transcriptional pausing, backtracking, and termination.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28408604      PMCID: PMC5528865          DOI: 10.1126/science.aal3059

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

Review 2.  Bacterial RNA polymerases: the wholo story.

Authors:  Katsuhiko S Murakami; Seth A Darst
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

3.  Structural basis of transcription activation: the CAP-alpha CTD-DNA complex.

Authors:  Brian Benoff; Huanwang Yang; Catherine L Lawson; Gary Parkinson; Jinsong Liu; Erich Blatter; Yon W Ebright; Helen M Berman; Richard H Ebright
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

4.  A NusE:NusG complex links transcription and translation.

Authors:  Björn M Burmann; Kristian Schweimer; Xiao Luo; Markus C Wahl; Barbara L Stitt; Max E Gottesman; Paul Rösch
Journal:  Science       Date:  2010-04-23       Impact factor: 47.728

5.  Structure of the 100S ribosome in the hibernation stage revealed by electron cryomicroscopy.

Authors:  Takayuki Kato; Hideji Yoshida; Tomoko Miyata; Yasushi Maki; Akira Wada; Keiichi Namba
Journal:  Structure       Date:  2010-06-09       Impact factor: 5.006

6.  NusA interaction with the α subunit of E. coli RNA polymerase is via the UP element site and releases autoinhibition.

Authors:  Kristian Schweimer; Stefan Prasch; Pagadala Santhanam Sujatha; Mikhail Bubunenko; Max E Gottesman; Paul Rösch
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

7.  Dynamic Behavior of Trigger Factor on the Ribosome.

Authors:  J Deeng; K Y Chan; E O van der Sluis; O Berninghausen; W Han; J Gumbart; K Schulten; B Beatrix; R Beckmann
Journal:  J Mol Biol       Date:  2016-06-16       Impact factor: 5.469

8.  A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase.

Authors:  W Ross; K K Gosink; J Salomon; K Igarashi; C Zou; A Ishihama; K Severinov; R L Gourse
Journal:  Science       Date:  1993-11-26       Impact factor: 47.728

9.  Translation activates the paused transcription complex and restores transcription of the trp operon leader region.

Authors:  R Landick; J Carey; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

10.  TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies.

Authors:  Yun Yang; Vidya C Darbari; Nan Zhang; Duo Lu; Robert Glyde; Yi-Ping Wang; Jared T Winkelman; Richard L Gourse; Katsuhiko S Murakami; Martin Buck; Xiaodong Zhang
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

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  64 in total

1.  Processing generates 3' ends of RNA masking transcription termination events in prokaryotes.

Authors:  Xun Wang; Monford Paul Abishek N; Heung Jin Jeon; Yonho Lee; Jin He; Sankar Adhya; Heon M Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-19       Impact factor: 11.205

2.  Kinetics coming into focus: single-molecule microscopy of riboswitch dynamics.

Authors:  Sujay Ray; Adrien Chauvier; Nils G Walter
Journal:  RNA Biol       Date:  2018-10-29       Impact factor: 4.652

3.  Measures of single- versus multiple-round translation argue against a mechanism to ensure coupling of transcription and translation.

Authors:  Menglin Chen; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-01       Impact factor: 11.205

Review 4.  Transcription of Bacterial Chromatin.

Authors:  Beth A Shen; Robert Landick
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

Review 5.  Processive Antitermination.

Authors:  Jonathan R Goodson; Wade C Winkler
Journal:  Microbiol Spectr       Date:  2018-09

Review 6.  Tuning the sequence specificity of a transcription terminator.

Authors:  Michael R Lawson; James M Berger
Journal:  Curr Genet       Date:  2019-02-09       Impact factor: 3.886

7.  Structural basis of transcription-translation coupling.

Authors:  Chengyuan Wang; Vadim Molodtsov; Emre Firlar; Jason T Kaelber; Gregor Blaha; Min Su; Richard H Ebright
Journal:  Science       Date:  2020-08-20       Impact factor: 47.728

8.  RNA Polymerase Accommodates a Pause RNA Hairpin by Global Conformational Rearrangements that Prolong Pausing.

Authors:  Jin Young Kang; Tatiana V Mishanina; Michael J Bellecourt; Rachel Anne Mooney; Seth A Darst; Robert Landick
Journal:  Mol Cell       Date:  2018-03-01       Impact factor: 17.970

9.  Effects of mRNA Degradation and Site-Specific Transcriptional Pausing on Protein Expression Noise.

Authors:  Sangjin Kim; Christine Jacobs-Wagner
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

10.  Escherichia coli transcription factor NusG binds to 70S ribosomes.

Authors:  Shivalika Saxena; Kamila K Myka; Robert Washburn; Nina Costantino; Donald L Court; Max E Gottesman
Journal:  Mol Microbiol       Date:  2018-04-06       Impact factor: 3.501

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