Literature DB >> 24451585

Biosynthetic consequences of multiple sequential post-transition-state bifurcations.

Young Joo Hong1, Dean J Tantillo1.   

Abstract

Selectivity in chemical reactions that form complex molecular architectures from simpler precursors is usually rationalized by comparing competing transition-state structures that lead to different possible products. Herein we describe a system for which a single transition-state structure leads to the formation of many isomeric products via pathways that feature multiple sequential bifurcations. The reaction network described connects the pimar-15-en-8-yl cation to miltiradiene, a tricyclic diterpene natural product, and isomers via cyclizations and/or rearrangements. The results suggest that the selectivity of the reaction is controlled by (post-transition-state) dynamic effects, that is, how the carbocation structure changes in response to the distribution of energy in its vibrational modes. The inherent dynamical effects revealed herein (characterized through quasiclassical direct dynamics calculations using density functional theory) have implications not only for the general principles of selectivity prediction in systems with complex potential energy surfaces, but also for the mechanisms of terpene synthase enzymes and their evolution. These findings redefine the challenges faced by nature in controlling the biosynthesis of complex natural products.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24451585     DOI: 10.1038/nchem.1843

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  30 in total

Review 1.  The carbocation continuum in terpene biosynthesis--where are the secondary cations?

Authors:  Dean J Tantillo
Journal:  Chem Soc Rev       Date:  2010-05-04       Impact factor: 54.564

2.  On the mechanism and selectivity of the combined C-H activation/Cope rearrangement.

Authors:  Jørn H Hansen; Timothy M Gregg; Stephanie R Ovalles; Yajing Lian; Jochen Autschbach; Huw M L Davies
Journal:  J Am Chem Soc       Date:  2011-03-08       Impact factor: 15.419

3.  Dynamics-driven reaction pathway in an intramolecular rearrangement.

Authors:  Salai Cheettu Ammal; Hiroshi Yamataka; Misako Aida; Michel Dupuis
Journal:  Science       Date:  2003-03-07       Impact factor: 47.728

4.  Mechanistic insights into triterpene synthesis from quantum mechanical calculations. Detection of systematic errors in B3LYP cyclization energies.

Authors:  Seiichi P T Matsuda; William K Wilson; Quanbo Xiong
Journal:  Org Biomol Chem       Date:  2006-01-04       Impact factor: 3.876

5.  The roaming atom: straying from the reaction path in formaldehyde decomposition.

Authors:  D Townsend; S A Lahankar; S K Lee; S D Chambreau; A G Suits; X Zhang; J Rheinecker; L B Harding; J M Bowman
Journal:  Science       Date:  2004-10-21       Impact factor: 47.728

6.  Electrostatic effects on (di)terpene synthase product outcome.

Authors:  Ke Zhou; Reuben J Peters
Journal:  Chem Commun (Camb)       Date:  2011-02-08       Impact factor: 6.222

7.  Control elements in dynamically determined selectivity on a bifurcating surface.

Authors:  Jacqueline B Thomas; Jack R Waas; Michael Harmata; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2008-10-11       Impact factor: 15.419

8.  Representative Benchmark Suites for Barrier Heights of Diverse Reaction Types and Assessment of Electronic Structure Methods for Thermochemical Kinetics.

Authors:  Jingjing Zheng; Yan Zhao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2007-03       Impact factor: 6.006

9.  Formation of the unusual semivolatile diterpene rhizathalene by the Arabidopsis class I terpene synthase TPS08 in the root stele is involved in defense against belowground herbivory.

Authors:  Martha M Vaughan; Qiang Wang; Francis X Webster; Dave Kiemle; Young J Hong; Dean J Tantillo; Robert M Coates; Austin T Wray; Whitnee Askew; Christopher O'Donnell; James G Tokuhisa; Dorothea Tholl
Journal:  Plant Cell       Date:  2013-03-19       Impact factor: 11.277

10.  A functional genomics approach to tanshinone biosynthesis provides stereochemical insights.

Authors:  Wei Gao; Matthew L Hillwig; Luqi Huang; Guanghong Cui; Xueyong Wang; Jianqiang Kong; Bin Yang; Reuben J Peters
Journal:  Org Lett       Date:  2009-11-19       Impact factor: 6.005

View more
  28 in total

1.  Dynamically Complex [6+4] and [4+2] Cycloadditions in the Biosynthesis of Spinosyn A.

Authors:  Ashay Patel; Zhuo Chen; Zhongyue Yang; Osvaldo Gutiérrez; Hung-wen Liu; K N Houk; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-03-09       Impact factor: 15.419

2.  Theoretical and computational studies of non-equilibrium and non-statistical dynamics in the gas phase, in the condensed phase and at interfaces.

Authors:  Riccardo Spezia; Emilio Martínez-Nuñez; Saulo Vazquez; William L Hase
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

Review 3.  Natural [4 + 2]-Cyclases.

Authors:  Byung-Sun Jeon; Shao-An Wang; Mark W Ruszczycky; Hung-Wen Liu
Journal:  Chem Rev       Date:  2016-12-01       Impact factor: 60.622

4.  Natural product biosynthesis: It's all downhill from here.

Authors:  Charles E Hornsby; Robert S Paton
Journal:  Nat Chem       Date:  2014-02       Impact factor: 24.427

Review 5.  Structural and Chemical Biology of Terpenoid Cyclases.

Authors:  David W Christianson
Journal:  Chem Rev       Date:  2017-08-25       Impact factor: 60.622

6.  Dynamics and the Regiochemistry of Nitration of Toluene.

Authors:  Yexenia Nieves-Quinones; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-11-10       Impact factor: 15.419

Review 7.  The expanding world of biosynthetic pericyclases: cooperation of experiment and theory for discovery.

Authors:  Cooper S Jamieson; Masao Ohashi; Fang Liu; Yi Tang; K N Houk
Journal:  Nat Prod Rep       Date:  2019-05-22       Impact factor: 13.423

8.  Gas-phase reactivity of [Ca(formamide)]2+ complex: an example of different dynamical behaviours.

Authors:  Ana Martin-Somer; Riccardo Spezia; Manuel Yáñez
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

9.  Predicting Productive Binding Modes for Substrates and Carbocation Intermediates in Terpene Synthases-Bornyl Diphosphate Synthase as a Representative Case.

Authors:  Terrence E O'Brien; Steven J Bertolani; Yue Zhang; Justin B Siegel; Dean J Tantillo
Journal:  ACS Catal       Date:  2018-03-08       Impact factor: 13.084

10.  Plasticity and evolution of (+)-3-carene synthase and (-)-sabinene synthase functions of a sitka spruce monoterpene synthase gene family associated with weevil resistance.

Authors:  Christopher R Roach; Dawn E Hall; Philipp Zerbe; Jörg Bohlmann
Journal:  J Biol Chem       Date:  2014-07-11       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.