Literature DB >> 16446812

Mechanistic insights into triterpene synthesis from quantum mechanical calculations. Detection of systematic errors in B3LYP cyclization energies.

Seiichi P T Matsuda1, William K Wilson, Quanbo Xiong.   

Abstract

Most quantum mechanical studies of triterpene synthesis have been done on small models. We calculated mPW1PW91/6-311+G(2d,p)//B3LYP/6-31G* energies for many C30H51O+ intermediates to establish the first comprehensive energy profiles for the cationic cyclization of oxidosqualene to lanosterol, lupeol, and hopen-3beta-ol. Differences among these 3 profiles were attributed to ring strain, steric effects, and proton affinity. Modest activation energy barriers and the ample exothermicity of most annulations indicated that the cationic intermediates rarely need enzymatic stabilization. The course of reaction is guided by hyperconjugation of the carbocationic 2p orbital with parallel C-C and C-H bonds. Hyperconjugation for cations with a horizontal 2p orbital (in the plane of the ABCD ring system) leads to annulation and ring expansion. If the 2p orbital becomes vertical, hyperconjugation fosters 1,2-methyl and hydride shifts. Transition states leading to rings D and E were bridged cyclopropane/carbonium ions, which allow ring expansion/annulation to bypass formation of undesirable anti-Markovnikov cations. Similar bridged species are also involved in many cation rearrangements. Our calculations revealed systematic errors in DFT cyclization energies. A spectacular example was the B3LYP/6-311+G(2d,p)//B3LYP/6-31G* prediction of endothermicity for the strongly exothermic cyclization of squalene to hopene. DFT cyclization energies for the 6-311+G(2d,p) basis set ranged from reasonable accuracy (mPW1PW91, TPSSh with 25% HF exchange) to underestimation (B3LYP, HCTH, TPSS, O3LYP) or overestimation (MP2, MPW1K, PBE1PBE). Despite minor inaccuracies, B3LYP/6-31G* geometries usually gave credible mPW1PW91 single-point energies. Nevertheless, DFT energies should be used cautiously until broadly reliable methods are established.

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Year:  2006        PMID: 16446812     DOI: 10.1039/b513599k

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  16 in total

1.  Computational and Synthetic Investigation of Cationic Rearrangement in the Putative Biosynthesis of Justicane Triterpenoids.

Authors:  Masha Elkin; Anthony C Scruse; Aneta Turlik; Timothy R Newhouse
Journal:  Angew Chem Int Ed Engl       Date:  2018-12-21       Impact factor: 15.336

2.  ΔF508-CFTR correctors: synthesis and evaluation of thiazole-tethered imidazolones, oxazoles, oxadiazoles, and thiadiazoles.

Authors:  Long Ye; Bao Hu; Faris El-Badri; Brandi M Hudson; Puay-Wah Phuan; A S Verkman; Dean J Tantillo; Mark J Kurth
Journal:  Bioorg Med Chem Lett       Date:  2014-10-02       Impact factor: 2.823

3.  Biosynthetic consequences of multiple sequential post-transition-state bifurcations.

Authors:  Young Joo Hong; Dean J Tantillo
Journal:  Nat Chem       Date:  2014-01-19       Impact factor: 24.427

4.  A potential energy surface bifurcation in terpene biosynthesis.

Authors:  Young J Hong; Dean J Tantillo
Journal:  Nat Chem       Date:  2009-07-13       Impact factor: 24.427

5.  Crystal Structure and Mechanistic Molecular Modeling Studies of Mycobacterium tuberculosis Diterpene Cyclase Rv3377c.

Authors:  Yue Zhang; Lisa M Prach; Terrence E O'Brien; Frank DiMaio; Daniil M Prigozhin; Jacob E Corn; Tom Alber; Justin B Siegel; Dean J Tantillo
Journal:  Biochemistry       Date:  2020-11-12       Impact factor: 3.162

6.  Traversing Biosynthetic Carbocation Landscapes in the Total Synthesis of Andrastin and Terretonin Meroterpenes.

Authors:  Gong Xu; Masha Elkin; Dean J Tantillo; Timothy R Newhouse; Thomas J Maimone
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-30       Impact factor: 15.336

7.  Computational Studies on the Pt(II)-Catalyzed Cycloisomerization of 1,6-dienes into Bicyclopropanes: A Mechanistic Quandary Evaluated by DFT.

Authors:  Franziska Bell; Jason Holland; Jennifer C Green; Michel R Gagné
Journal:  Organometallics       Date:  2009-04-13       Impact factor: 3.876

8.  Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.

Authors:  Joseph P Noel; Nikki Dellas; Juan A Faraldos; Marylin Zhao; B Andes Hess; Lidia Smentek; Robert M Coates; Paul E O'Maille
Journal:  ACS Chem Biol       Date:  2010-04-16       Impact factor: 5.100

9.  Strictosidine synthase: mechanism of a Pictet-Spengler catalyzing enzyme.

Authors:  Justin J Maresh; Lesley-Ann Giddings; Anne Friedrich; Elke A Loris; Santosh Panjikar; Bernhardt L Trout; Joachim Stöckigt; Baron Peters; Sarah E O'Connor
Journal:  J Am Chem Soc       Date:  2008-01-16       Impact factor: 15.419

10.  Exploiting the Potential of Meroterpenoid Cyclases to Expand the Chemical Space of Fungal Meroterpenoids.

Authors:  Takaaki Mitsuhashi; Lena Barra; Zachary Powers; Volga Kojasoy; Andrea Cheng; Feng Yang; Yoshimasa Taniguchi; Takashi Kikuchi; Makoto Fujita; Dean J Tantillo; John A Porco; Ikuro Abe
Journal:  Angew Chem Int Ed Engl       Date:  2020-10-22       Impact factor: 15.336

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