Literature DB >> 21305070

Electrostatic effects on (di)terpene synthase product outcome.

Ke Zhou1, Reuben J Peters.   

Abstract

Terpene synthases catalyze complex reactions, often forming multiple chiral centers in cyclized olefin products from acyclic allylic diphosphate precursors, yet have been suggested to largely control their reactions via steric effects, serving as templates. However, recent results highlight electrostatic effects also exerted by these enzymes. Perhaps not surprisingly, the pyrophosphate co-product released in the initiating and rate-limiting chemical step provides an obvious counter-ion that may steer carbocation migration towards itself. This is emphasized by the striking effects of a recently uncovered single residue switch for diterpene synthase product outcome, whereby substitution of hydroxyl residues for particular aliphatic residues has been shown to be sufficient to "short-circuit" complex cyclization and/or rearrangement reactions, with the converse change further found to be sufficient to increase reaction complexity. The mechanistic hypothesis for the observed effects is hydroxyl dipole stabilization of the specific carbocation formed by initial cyclization, enabling deprotonation of this early intermediate, whereas the lack of such stabilization (i.e. in the presence of an aliphatic side chain) leads to carbocation migration towards the pyrophosphate co-product, resulting in a more complex reaction. This is further consistent with the greater synergy exhibited between pyrophosphate and aza-analogs of late, relative to early, stage carbocation intermediates, and crystallographic analysis of the monoterpene cyclase bornyl diphosphate synthase wherein mechanistically non-relevant counter-ion pairing between aza-analogs of early stage carbocation intermediates and pyrophosphate is observed. Thus, (di)terpene synthases seem to mediate specific reaction outcomes, at least in part, by providing electrostatic effects to counteract those exerted by the pyrophosphate co-product.

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Year:  2011        PMID: 21305070      PMCID: PMC3718459          DOI: 10.1039/c0cc02960b

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  48 in total

1.  Crystal structure determination of aristolochene synthase from the blue cheese mold, Penicillium roqueforti.

Authors:  J M Caruthers; I Kang; M J Rynkiewicz; D E Cane; D W Christianson
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

2.  Challenges posed to bornyl diphosphate synthase: diverging reaction mechanisms in monoterpenes.

Authors:  Michal Weitman; Dan Thomas Major
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

3.  Stereochemistry of the cyclization-rearrangement of (+)-copalyl diphosphate to (-)-abietadiene catalyzed by recombinant abietadiene synthase from Abies grandis.

Authors:  M M Ravn; R M Coates; J E Flory; R J Peters; R Croteau
Journal:  Org Lett       Date:  2000-03-09       Impact factor: 6.005

4.  X-ray crystallographic studies of substrate binding to aristolochene synthase suggest a metal ion binding sequence for catalysis.

Authors:  Ekaterina Y Shishova; Fanglei Yu; David J Miller; Juan A Faraldos; Yuxin Zhao; Robert M Coates; Rudolf K Allemann; David E Cane; David W Christianson
Journal:  J Biol Chem       Date:  2008-04-02       Impact factor: 5.157

5.  Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.

Authors:  Joseph P Noel; Nikki Dellas; Juan A Faraldos; Marylin Zhao; B Andes Hess; Lidia Smentek; Robert M Coates; Paul E O'Maille
Journal:  ACS Chem Biol       Date:  2010-04-16       Impact factor: 5.100

6.  Intermediacy of eudesmane cation during catalysis by aristolochene synthase.

Authors:  Juan A Faraldos; Benson Kariuki; Rudolf K Allemann
Journal:  J Org Chem       Date:  2010-02-19       Impact factor: 4.354

7.  Increasing complexity of a diterpene synthase reaction with a single residue switch.

Authors:  Dana Morrone; Meimei Xu; D Bruce Fulton; Mara K Determan; Reuben J Peters
Journal:  J Am Chem Soc       Date:  2008-03-26       Impact factor: 15.419

8.  Investigating the conservation pattern of a putative second terpene synthase divalent metal binding motif in plants.

Authors:  Ke Zhou; Reuben J Peters
Journal:  Phytochemistry       Date:  2009-02-07       Impact factor: 4.072

9.  Gibberellin biosynthesis in bacteria: separate ent-copalyl diphosphate and ent-kaurene synthases in Bradyrhizobium japonicum.

Authors:  Dana Morrone; Jacob Chambers; Luke Lowry; Gunjune Kim; Aldwin Anterola; Kelly Bender; Reuben J Peters
Journal:  FEBS Lett       Date:  2008-12-31       Impact factor: 4.124

10.  Functional plasticity of paralogous diterpene synthases involved in conifer defense.

Authors:  Christopher I Keeling; Sabrina Weisshaar; Roy P C Lin; Jörg Bohlmann
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-15       Impact factor: 11.205

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  20 in total

1.  Effect of isotopically sensitive branching on product distribution for pentalenene synthase: support for a mechanism predicted by quantum chemistry.

Authors:  Liansuo Zu; Meimei Xu; Michael W Lodewyk; David E Cane; Reuben J Peters; Dean J Tantillo
Journal:  J Am Chem Soc       Date:  2012-07-09       Impact factor: 15.419

2.  Biosynthetic consequences of multiple sequential post-transition-state bifurcations.

Authors:  Young Joo Hong; Dean J Tantillo
Journal:  Nat Chem       Date:  2014-01-19       Impact factor: 24.427

3.  Insights into diterpene cyclization from structure of bifunctional abietadiene synthase from Abies grandis.

Authors:  Ke Zhou; Yang Gao; Julie A Hoy; Francis M Mann; Richard B Honzatko; Reuben J Peters
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

4.  Novel product chemistry from mechanistic analysis of ent-copalyl diphosphate synthases from plant hormone biosynthesis.

Authors:  Kevin Potter; Jared Criswell; Jiachen Zi; Alisha Stubbs; Reuben J Peters
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-23       Impact factor: 15.336

5.  A single residue change leads to a hydroxylated product from the class II diterpene cyclization catalyzed by abietadiene synthase.

Authors:  Jared Criswell; Kevin Potter; Freya Shephard; Michael H Beale; Reuben J Peters
Journal:  Org Lett       Date:  2012-11-20       Impact factor: 6.005

6.  Chemical Control in the Battle against Fidelity in Promiscuous Natural Product Biosynthesis: The Case of Trichodiene Synthase.

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2016-12-02       Impact factor: 13.084

7.  Biochemical characterization of the castor bean ent-kaurene synthase(-like) family supports quantum chemical view of diterpene cyclization.

Authors:  Alana J Jackson; David M Hershey; Taylor Chesnut; Meimei Xu; Reuben J Peters
Journal:  Phytochemistry       Date:  2014-05-05       Impact factor: 4.072

Review 8.  Terpenoid synthase structures: a so far incomplete view of complex catalysis.

Authors:  Yang Gao; Richard B Honzatko; Reuben J Peters
Journal:  Nat Prod Rep       Date:  2012-08-21       Impact factor: 13.423

9.  Gene discovery of modular diterpene metabolism in nonmodel systems.

Authors:  Philipp Zerbe; Björn Hamberger; Macaire M S Yuen; Angela Chiang; Harpreet K Sandhu; Lina L Madilao; Anh Nguyen; Britta Hamberger; Søren Spanner Bach; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2013-04-23       Impact factor: 8.340

Review 10.  To gibberellins and beyond! Surveying the evolution of (di)terpenoid metabolism.

Authors:  Jiachen Zi; Sibongile Mafu; Reuben J Peters
Journal:  Annu Rev Plant Biol       Date:  2014-01-22       Impact factor: 26.379

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