Literature DB >> 26637036

Representative Benchmark Suites for Barrier Heights of Diverse Reaction Types and Assessment of Electronic Structure Methods for Thermochemical Kinetics.

Jingjing Zheng1, Yan Zhao1, Donald G Truhlar1.   

Abstract

We propose three small sets of barrier heights for heavy-atom transfer, nucleophilic substitution, and unimolecular and association reactions as benchmarks for comparing and developing theoretical methods. We chose the data sets to be statistically representative subsets of the NHTBH38/04 database. Each data set consists of 6 barrier heights; we call these small benchmark suites HATBH6, NSBH6, and UABH6. Benchmark values are tabulated for 205 combinations of theory level and basis set. The theory levels studied include single-level wave function theory like Hartree-Fock, Møller-Plesset perturbation theory, quadratic configuration interaction, and coupled cluster theory; they also include multicoefficient correlation methods, local and hybrid density functional theory, and semiempirical molecular orbital methods. The three new representative data sets are combined with a previous representative data set for hydrogen-transfer reactions to form a new compact but diverse and representative data set called DBH24. Comparison of a large number of methods for their performance on DBH24 leads us to recommend the following methods for barrier height calculations, in order of decreasing cost:  G3SX, BMC-CCSD, PWB6K, BB1K, M06-L, MPW1K, HF/MIDI!, and PM3.

Entities:  

Year:  2007        PMID: 26637036     DOI: 10.1021/ct600281g

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  14 in total

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Journal:  Chem Rev       Date:  2011-06-28       Impact factor: 60.622

3.  Survival of the most transferable at the top of Jacob's ladder: Defining and testing the ωB97M(2) double hybrid density functional.

Authors:  Narbe Mardirossian; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2018-06-28       Impact factor: 3.488

4.  The exocyclic amino group of adenine in PtII and PdII complexes: a critical comparison of the X-ray crystallographic structural data and gas phase calculations.

Authors:  Radu Silaghi-Dumitrescu; Béla Mihály; Timea Mihály; Amr A A Attia; Pablo J Sanz Miguel; Bernhard Lippert
Journal:  J Biol Inorg Chem       Date:  2017-03-17       Impact factor: 3.358

5.  Involvement of ferryl in the reaction between nitrite and the oxy forms of globins.

Authors:  Denisa Hathazi; Sonia Diana Mahuţ; Florina-Violeta Scurtu; Cristina Bischin; Corina Stanciu; Amr Ali Attia; Grigore Damian; Radu Silaghi-Dumitrescu
Journal:  J Biol Inorg Chem       Date:  2014-07-27       Impact factor: 3.358

6.  Biosynthetic consequences of multiple sequential post-transition-state bifurcations.

Authors:  Young Joo Hong; Dean J Tantillo
Journal:  Nat Chem       Date:  2014-01-19       Impact factor: 24.427

7.  N-O bond cleavage mechanism(s) in nitrous oxide reductase.

Authors:  Mehmed Z Ertem; Christopher J Cramer; Fahmi Himo; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2012-03-21       Impact factor: 3.358

8.  Bacterial nitric oxide reductase: a mechanism revisited by an ONIOM (DFT:MM) study.

Authors:  Amr A A Attia; Radu Silaghi-Dumitrescu
Journal:  J Mol Model       Date:  2015-04-29       Impact factor: 1.810

9.  DFT tests for group 8 transition metal carbonyl complexes.

Authors:  Pipsa Hirva; Matti Haukka; Minna Jakonen; M Andreina Moreno
Journal:  J Mol Model       Date:  2008-01-05       Impact factor: 1.810

10.  Mechanistic insights into electrochemical reduction of CO2 over Ag using density functional theory and transport models.

Authors:  Meenesh R Singh; Jason D Goodpaster; Adam Z Weber; Martin Head-Gordon; Alexis T Bell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-02       Impact factor: 11.205

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