Literature DB >> 26909570

Dynamically Complex [6+4] and [4+2] Cycloadditions in the Biosynthesis of Spinosyn A.

Ashay Patel1, Zhuo Chen2, Zhongyue Yang1, Osvaldo Gutiérrez1, Hung-wen Liu3, K N Houk1, Daniel A Singleton2.   

Abstract

SpnF, an enzyme involved in the biosynthesis of spinosyn A, catalyzes a transannular Diels-Alder reaction. Quantum mechanical computations and dynamic simulations now show that this cycloaddition is not well described as either a concerted or stepwise process, and dynamical effects influence the identity and timing of bond formation. The transition state for the reaction is ambimodal and leads directly to both the observed Diels-Alder and an unobserved [6+4] cycloadduct. The potential energy surface bifurcates and the cycloadditions occur by dynamically stepwise modes featuring an "entropic intermediate". A rapid Cope rearrangement converts the [6+4] adduct into the observed [4+2] adduct. Control of nonstatistical dynamical effects may serve as another way by which enzymes control reactions.

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Year:  2016        PMID: 26909570      PMCID: PMC5367884          DOI: 10.1021/jacs.6b00017

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

Review 1.  Chemistry and biology of biosynthetic Diels-Alder reactions.

Authors:  Emily M Stocking; Robert M Williams
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-14       Impact factor: 15.336

2.  A bispericyclic transition structure allows for efficient relief of antiaromaticity enhancing reactivity and endo stereoselectivity in the dimerization of the fleeting cyclopentadienone.

Authors:  Paolo Quadrelli; Silvano Romano; Lucio Toma; Pierluigi Caramella
Journal:  J Org Chem       Date:  2003-07-25       Impact factor: 4.354

Review 3.  Intramolecular cyclizations of polyketide biosynthesis: mining for a "Diels-Alderase"?

Authors:  Wendy L Kelly
Journal:  Org Biomol Chem       Date:  2008-11-04       Impact factor: 3.876

Review 4.  Current developments and challenges in the search for a naturally selected Diels-Alderase.

Authors:  Hak Joong Kim; Mark W Ruszczycky; Hung-wen Liu
Journal:  Curr Opin Chem Biol       Date:  2012-01-17       Impact factor: 8.822

5.  Complete reconstitution of a highly reducing iterative polyketide synthase.

Authors:  Suzanne M Ma; Jesse W-H Li; Jin W Choi; Hui Zhou; K K Michael Lee; Vijayalakshmi A Moorthie; Xinkai Xie; James T Kealey; Nancy A Da Silva; John C Vederas; Yi Tang
Journal:  Science       Date:  2009-10-23       Impact factor: 47.728

6.  Recrossing and dynamic matching effects on selectivity in a Diels-Alder reaction.

Authors:  Zhihong Wang; Jennifer S Hirschi; Daniel A Singleton
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Involvement of Lipocalin-like CghA in Decalin-Forming Stereoselective Intramolecular [4+2] Cycloaddition.

Authors:  Michio Sato; Fumitoshi Yagishita; Takashi Mino; Nahoko Uchiyama; Ashay Patel; Yit-Heng Chooi; Yukihiro Goda; Wei Xu; Hiroshi Noguchi; Tsuyoshi Yamamoto; Kinya Hotta; Kendall N Houk; Yi Tang; Kenji Watanabe
Journal:  Chembiochem       Date:  2015-10-02       Impact factor: 3.164

8.  Control elements in dynamically determined selectivity on a bifurcating surface.

Authors:  Jacqueline B Thomas; Jack R Waas; Michael Harmata; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2008-10-11       Impact factor: 15.419

9.  Enzyme-catalysed [4+2] cycloaddition is a key step in the biosynthesis of spinosyn A.

Authors:  Hak Joong Kim; Mark W Ruszczycky; Sei-hyun Choi; Yung-nan Liu; Hung-wen Liu
Journal:  Nature       Date:  2011-05-05       Impact factor: 49.962

10.  Biosynthesis of versipelostatin: identification of an enzyme-catalyzed [4+2]-cycloaddition required for macrocyclization of spirotetronate-containing polyketides.

Authors:  Takuya Hashimoto; Junko Hashimoto; Kuniko Teruya; Takashi Hirano; Kazuo Shin-ya; Haruo Ikeda; Hung-wen Liu; Makoto Nishiyama; Tomohisa Kuzuyama
Journal:  J Am Chem Soc       Date:  2015-01-05       Impact factor: 15.419

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  22 in total

Review 1.  Oxidative Cyclization in Natural Product Biosynthesis.

Authors:  Man-Cheng Tang; Yi Zou; Kenji Watanabe; Christopher T Walsh; Yi Tang
Journal:  Chem Rev       Date:  2016-12-12       Impact factor: 60.622

Review 2.  Natural [4 + 2]-Cyclases.

Authors:  Byung-Sun Jeon; Shao-An Wang; Mark W Ruszczycky; Hung-Wen Liu
Journal:  Chem Rev       Date:  2016-12-01       Impact factor: 60.622

3.  Mechanistic Investigations of the Iron(III)-Catalyzed Carbonyl-Olefin Metathesis Reaction.

Authors:  Jacob R Ludwig; Susan Phan; Christopher C McAtee; Paul M Zimmerman; James J Devery; Corinna S Schindler
Journal:  J Am Chem Soc       Date:  2017-07-28       Impact factor: 15.419

Review 4.  The Enzymology of Organic Transformations: A Survey of Name Reactions in Biological Systems.

Authors:  Chia-I Lin; Reid M McCarty; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-14       Impact factor: 15.336

5.  Investigation of the mechanism of the SpnF-catalyzed [4+2]-cycloaddition reaction in the biosynthesis of spinosyn A.

Authors:  Byung-Sun Jeon; Mark W Ruszczycky; William K Russell; Geng-Min Lin; Namho Kim; Sei-Hyun Choi; Shao-An Wang; Yung-Nan Liu; John W Patrick; David H Russell; Hung-Wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

6.  Dynamics and the Regiochemistry of Nitration of Toluene.

Authors:  Yexenia Nieves-Quinones; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-11-10       Impact factor: 15.419

Review 7.  The expanding world of biosynthetic pericyclases: cooperation of experiment and theory for discovery.

Authors:  Cooper S Jamieson; Masao Ohashi; Fang Liu; Yi Tang; K N Houk
Journal:  Nat Prod Rep       Date:  2019-05-22       Impact factor: 13.423

Review 8.  Recent advances of Diels-Alderases involved in natural product biosynthesis.

Authors:  Atsushi Minami; Hideaki Oikawa
Journal:  J Antibiot (Tokyo)       Date:  2016-06-15       Impact factor: 2.649

Review 9.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

10.  Influence of water and enzyme SpnF on the dynamics and energetics of the ambimodal [6+4]/[4+2] cycloaddition.

Authors:  Zhongyue Yang; Song Yang; Peiyuan Yu; Yanwei Li; Charles Doubleday; Jiyong Park; Ashay Patel; Byung-Sun Jeon; William K Russell; Hung-Wen Liu; David H Russell; Kendall N Houk
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-18       Impact factor: 11.205

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