Literature DB >> 24444693

Noise in biology.

Lev S Tsimring1.   

Abstract

Noise permeates biology on all levels, from the most basic molecular, sub-cellular processes to the dynamics of tissues, organs, organisms and populations. The functional roles of noise in biological processes can vary greatly. Along with standard, entropy-increasing effects of producing random mutations, diversifying phenotypes in isogenic populations, limiting information capacity of signaling relays, it occasionally plays more surprising constructive roles by accelerating the pace of evolution, providing selective advantage in dynamic environments, enhancing intracellular transport of biomolecules and increasing information capacity of signaling pathways. This short review covers the recent progress in understanding mechanisms and effects of fluctuations in biological systems of different scales and the basic approaches to their mathematical modeling.

Entities:  

Mesh:

Year:  2014        PMID: 24444693      PMCID: PMC4033672          DOI: 10.1088/0034-4885/77/2/026601

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  190 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

4.  Delay-induced stochastic oscillations in gene regulation.

Authors:  Dmitri Bratsun; Dmitri Volfson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  From fluctuations to phenotypes: the physiology of noise.

Authors:  Michael S Samoilov; Gavin Price; Adam P Arkin
Journal:  Sci STKE       Date:  2006-12-19

6.  Information flow and optimization in transcriptional regulation.

Authors:  Gasper Tkacik; Curtis G Callan; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

7.  A unified model of transcription elongation: what have we learned from single-molecule experiments?

Authors:  Vasisht R Tadigotla; Evgeny Nudler; Andrei E Ruckenstein
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

Review 8.  Fluctuating asymmetry: an epigenetic measure of stress.

Authors:  P A Parsons
Journal:  Biol Rev Camb Philos Soc       Date:  1990-05

Review 9.  Microfluidic devices for measuring gene network dynamics in single cells.

Authors:  Matthew R Bennett; Jeff Hasty
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

Review 10.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

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  80 in total

1.  Random bursts determine dynamics of active filaments.

Authors:  Christoph A Weber; Ryo Suzuki; Volker Schaller; Igor S Aranson; Andreas R Bausch; Erwin Frey
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

2.  Positional information, positional error, and readout precision in morphogenesis: a mathematical framework.

Authors:  Gašper Tkačik; Julien O Dubuis; Mariela D Petkova; Thomas Gregor
Journal:  Genetics       Date:  2014-10-31       Impact factor: 4.562

Review 3.  Pervasive robustness in biological systems.

Authors:  Marie-Anne Félix; Michalis Barkoulas
Journal:  Nat Rev Genet       Date:  2015-08       Impact factor: 53.242

4.  Ephemeral states in protein folding under force captured with a magnetic tweezers design.

Authors:  Rafael Tapia-Rojo; Edward C Eckels; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 5.  Towards a physical understanding of developmental patterning.

Authors:  Jose Negrete; Andrew C Oates
Journal:  Nat Rev Genet       Date:  2021-05-10       Impact factor: 53.242

6.  Role of integrated noise in pathway-specific signal propagation in feed-forward loops.

Authors:  Mintu Nandi
Journal:  Theory Biosci       Date:  2021-03-09       Impact factor: 1.919

Review 7.  Fate-Regulating Circuits in Viruses: From Discovery to New Therapy Targets.

Authors:  Anand Pai; Leor S Weinberger
Journal:  Annu Rev Virol       Date:  2017-08-11       Impact factor: 10.431

Review 8.  Control and regulation of pathways via negative feedback.

Authors:  Herbert M Sauro
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

9.  High-resolution mapping of bifurcations in nonlinear biochemical circuits.

Authors:  A J Genot; A Baccouche; R Sieskind; N Aubert-Kato; N Bredeche; J F Bartolo; V Taly; T Fujii; Y Rondelez
Journal:  Nat Chem       Date:  2016-06-20       Impact factor: 24.427

Review 10.  Distinguishing between resistance, tolerance and persistence to antibiotic treatment.

Authors:  Asher Brauner; Ofer Fridman; Orit Gefen; Nathalie Q Balaban
Journal:  Nat Rev Microbiol       Date:  2016-04       Impact factor: 60.633

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