Literature DB >> 33972772

Towards a physical understanding of developmental patterning.

Jose Negrete1, Andrew C Oates2.   

Abstract

The temporal coordination of events at cellular and tissue scales is essential for the proper development of organisms, and involves cell-intrinsic processes that can be coupled by local cellular signalling and instructed by global signalling, thereby creating spatial patterns of cellular states that change over time. The timing and structure of these patterns determine how an organism develops. Traditional developmental genetic methods have revealed the complex molecular circuits regulating these processes but are limited in their ability to predict and understand the emergent spatio-temporal dynamics. Increasingly, approaches from physics are now being used to help capture the dynamics of the system by providing simplified, generic descriptions. Combined with advances in imaging and computational power, such approaches aim to provide insight into timing and patterning in developing systems.

Year:  2021        PMID: 33972772     DOI: 10.1038/s41576-021-00355-7

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  91 in total

Review 1.  Modeling DNA sequence-based cis-regulatory gene networks.

Authors:  Hamid Bolouri; Eric H Davidson
Journal:  Dev Biol       Date:  2002-06-01       Impact factor: 3.582

Review 2.  Properties of developmental gene regulatory networks.

Authors:  Eric H Davidson; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

3.  Guide to light-sheet microscopy for adventurous biologists.

Authors:  Emmanuel G Reynaud; Jan Peychl; Jan Huisken; Pavel Tomancak
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

4.  Assessing regulatory information in developmental gene regulatory networks.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-06       Impact factor: 11.205

5.  A practical guide to adaptive light-sheet microscopy.

Authors:  Loïc A Royer; William C Lemon; Raghav K Chhetri; Philipp J Keller
Journal:  Nat Protoc       Date:  2018-11       Impact factor: 13.491

Review 6.  Pioneer Transcription Factors Initiating Gene Network Changes.

Authors:  Kenneth S Zaret
Journal:  Annu Rev Genet       Date:  2020-09-04       Impact factor: 16.830

Review 7.  The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.

Authors:  Erik A Rodriguez; Robert E Campbell; John Y Lin; Michael Z Lin; Atsushi Miyawaki; Amy E Palmer; Xiaokun Shu; Jin Zhang; Roger Y Tsien
Journal:  Trends Biochem Sci       Date:  2016-11-01       Impact factor: 13.807

Review 8.  Recent advances in the use of genetically encodable optical tools to elicit and monitor signaling events.

Authors:  Ha Neul Lee; Sohum Mehta; Jin Zhang
Journal:  Curr Opin Cell Biol       Date:  2020-02-10       Impact factor: 8.382

9.  Multistable and dynamic CRISPRi-based synthetic circuits.

Authors:  Javier Santos-Moreno; Eve Tasiudi; Joerg Stelling; Yolanda Schaerli
Journal:  Nat Commun       Date:  2020-06-02       Impact factor: 14.919

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