Literature DB >> 30936303

Ephemeral states in protein folding under force captured with a magnetic tweezers design.

Rafael Tapia-Rojo1, Edward C Eckels2, Julio M Fernández1.   

Abstract

Magnetic tape heads are ubiquitously used to read and record on magnetic tapes in technologies as diverse as old VHS tapes, modern hard-drive disks, or magnetic bands on credit cards. Their design highlights the ability to convert electric signals into fluctuations of the magnetic field at very high frequencies, which is essential for the high-density storage demanded nowadays. Here, we twist this conventional use of tape heads to implement one in a magnetic tweezers design, which offers the unique capability of changing the force with a bandwidth of ∼10 kHz. We calibrate our instrument by developing an analytical expression that predicts the magnetic force acting on a superparamagnetic bead based on the Karlqvist approximation of the magnetic field created by a tape head. This theory is validated by measuring the force dependence of protein L unfolding/folding step sizes and the folding properties of the R3 talin domain. We demonstrate the potential of our instrument by carrying out millisecond-long quenches to capture the formation of the ephemeral molten globule state in protein L, which has never been observed before. Our instrument provides the capability of interrogating individual molecules under fast-changing forces with a control and resolution below a fraction of a piconewton, opening a range of force spectroscopy protocols to study protein dynamics under force.

Keywords:  dynamic force spectroscopy; magnetic tape head; molten globule state; protein folding; protein mechanics

Year:  2019        PMID: 30936303      PMCID: PMC6475431          DOI: 10.1073/pnas.1821284116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  A breakdown of symmetry in the folding transition state of protein L.

Authors:  D E Kim; C Fisher; D Baker
Journal:  J Mol Biol       Date:  2000-05-19       Impact factor: 5.469

2.  Single protein misfolding events captured by atomic force microscopy.

Authors:  A F Oberhauser; P E Marszalek; M Carrion-Vazquez; J M Fernandez
Journal:  Nat Struct Biol       Date:  1999-11

3.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

4.  Force-clamp spectroscopy monitors the folding trajectory of a single protein.

Authors:  Julio M Fernandez; Hongbin Li
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

5.  Direct observation of the three-state folding of a single protein molecule.

Authors:  Ciro Cecconi; Elizabeth A Shank; Carlos Bustamante; Susan Marqusee
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

Review 6.  Magnetism and microfluidics.

Authors:  Nicole Pamme
Journal:  Lab Chip       Date:  2005-11-28       Impact factor: 6.799

7.  Thin-foil magnetic force system for high-numerical-aperture microscopy.

Authors:  J K Fisher; J Cribb; K V Desai; L Vicci; B Wilde; K Keller; R M Taylor; J Haase; K Bloom; E Timothy O'Brien; R Superfine
Journal:  Rev Sci Instrum       Date:  2006-02       Impact factor: 1.523

8.  Wringing out DNA.

Authors:  Timothée Lionnet; Sylvain Joubaud; Richard Lavery; David Bensimon; Vincent Croquette
Journal:  Phys Rev Lett       Date:  2006-05-05       Impact factor: 9.161

9.  Cofabrication of electromagnets and microfluidic systems in poly(dimethylsiloxane).

Authors:  Adam C Siegel; Sergey S Shevkoplyas; Douglas B Weibel; Derek A Bruzewicz; Andres W Martinez; George M Whitesides
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-20       Impact factor: 15.336

10.  The force acting on a superparamagnetic bead due to an applied magnetic field.

Authors:  Sergey S Shevkoplyas; Adam C Siegel; Robert M Westervelt; Mara G Prentiss; George M Whitesides
Journal:  Lab Chip       Date:  2007-07-25       Impact factor: 6.799

View more
  10 in total

1.  Talin folding as the tuning fork of cellular mechanotransduction.

Authors:  Rafael Tapia-Rojo; Álvaro Alonso-Caballero; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-17       Impact factor: 11.205

Review 2.  Single-Molecule Studies of Protein Folding with Optical Tweezers.

Authors:  Carlos Bustamante; Lisa Alexander; Kevin Maciuba; Christian M Kaiser
Journal:  Annu Rev Biochem       Date:  2020-06-20       Impact factor: 23.643

3.  The biophysics of cancer: emerging insights from micro- and nanoscale tools.

Authors:  Peter E Beshay; Marcos G Cortes-Medina; Miles M Menyhert; Jonathan W Song
Journal:  Adv Nanobiomed Res       Date:  2021-11-23

4.  Trans-toxin ion-sensitivity of charybdotoxin-blocked potassium-channels reveals unbinding transitional states.

Authors:  Hans Moldenhauer; Ignacio Díaz-Franulic; Horacio Poblete; David Naranjo
Journal:  Elife       Date:  2019-07-04       Impact factor: 8.140

5.  Multiplexed protein force spectroscopy reveals equilibrium protein folding dynamics and the low-force response of von Willebrand factor.

Authors:  Achim Löf; Philipp U Walker; Steffen M Sedlak; Sophia Gruber; Tobias Obser; Maria A Brehm; Martin Benoit; Jan Lipfert
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-28       Impact factor: 11.205

6.  A HaloTag-TEV genetic cassette for mechanical phenotyping of proteins from tissues.

Authors:  Jaime Andrés Rivas-Pardo; Yong Li; Zsolt Mártonfalvi; Rafael Tapia-Rojo; Andreas Unger; Ángel Fernández-Trasancos; Elías Herrero-Galán; Diana Velázquez-Carreras; Julio M Fernández; Wolfgang A Linke; Jorge Alegre-Cebollada
Journal:  Nat Commun       Date:  2020-04-28       Impact factor: 14.919

7.  Direct observation of a coil-to-helix contraction triggered by vinculin binding to talin.

Authors:  Rafael Tapia-Rojo; Alvaro Alonso-Caballero; Julio M Fernandez
Journal:  Sci Adv       Date:  2020-05-22       Impact factor: 14.136

8.  Protein folding modulates the chemical reactivity of a Gram-positive adhesin.

Authors:  Alvaro Alonso-Caballero; Daniel J Echelman; Rafael Tapia-Rojo; Shubhasis Haldar; Edward C Eckels; Julio M Fernandez
Journal:  Nat Chem       Date:  2020-11-30       Impact factor: 24.427

Review 9.  The molecular mechanisms underlying mussel adhesion.

Authors:  Yiran Li; Yi Cao
Journal:  Nanoscale Adv       Date:  2019-10-10

Review 10.  Nano-Precision Tweezers for Mechanosensitive Proteins and Beyond.

Authors:  Taehyun Yang; Celine Park; Sang-Hyun Rah; Min Ju Shon
Journal:  Mol Cells       Date:  2022-01-31       Impact factor: 5.034

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.