| Literature DB >> 25361898 |
Gašper Tkačik1, Julien O Dubuis2, Mariela D Petkova3, Thomas Gregor2.
Abstract
The concept of positional information is central to our understanding of how cells determine their location in a multicellular structure and thereby their developmental fates. Nevertheless, positional information has neither been defined mathematically nor quantified in a principled way. Here we provide an information-theoretic definition in the context of developmental gene expression patterns and examine the features of expression patterns that affect positional information quantitatively. We connect positional information with the concept of positional error and develop tools to directly measure information and error from experimental data. We illustrate our framework for the case of gap gene expression patterns in the early Drosophila embryo and show how information that is distributed among only four genes is sufficient to determine developmental fates with nearly single-cell resolution. Our approach can be generalized to a variety of different model systems; procedures and examples are discussed in detail.Entities:
Keywords: development; patterning; positional information; precision
Mesh:
Year: 2014 PMID: 25361898 PMCID: PMC4286692 DOI: 10.1534/genetics.114.171850
Source DB: PubMed Journal: Genetics ISSN: 0016-6731 Impact factor: 4.562