Literature DB >> 22203719

Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.

Maja Temerinac-Ott1, Olaf Ronneberger, Peter Ochs, Wolfgang Driever, Thomas Brox, Hans Burkhardt.   

Abstract

We propose an algorithm for 3-D multiview deblurring using spatially variant point spread functions (PSFs). The algorithm is applied to multiview reconstruction of volumetric microscopy images. It includes registration and estimation of the PSFs using irregularly placed point markers (beads). We formulate multiview deblurring as an energy minimization problem subject to L1-regularization. Optimization is based on the regularized Lucy-Richardson algorithm, which we extend to deal with our more general model. The model parameters are chosen in a profound way by optimizing them on a realistic training set. We quantitatively and qualitatively compare with existing methods and show that our method provides better signal-to-noise ratio and increases the resolution of the reconstructed images.

Mesh:

Year:  2011        PMID: 22203719     DOI: 10.1109/TIP.2011.2181528

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  13 in total

Review 1.  Automated processing of zebrafish imaging data: a survey.

Authors:  Ralf Mikut; Thomas Dickmeis; Wolfgang Driever; Pierre Geurts; Fred A Hamprecht; Bernhard X Kausler; María J Ledesma-Carbayo; Raphaël Marée; Karol Mikula; Periklis Pantazis; Olaf Ronneberger; Andres Santos; Rainer Stotzka; Uwe Strähle; Nadine Peyriéras
Journal:  Zebrafish       Date:  2013-06-12       Impact factor: 1.985

2.  Measure and model a 3-D space-variant PSF for fluorescence microscopy image deblurring.

Authors:  Yemeng Chen; Mengmeng Chen; Li Zhu; Jane Y Wu; Sidan Du; Yang Li
Journal:  Opt Express       Date:  2018-05-28       Impact factor: 3.894

3.  Dual-view plane illumination microscopy for rapid and spatially isotropic imaging.

Authors:  Abhishek Kumar; Yicong Wu; Ryan Christensen; Panagiotis Chandris; William Gandler; Evan McCreedy; Alexandra Bokinsky; Daniel A Colón-Ramos; Zhirong Bao; Matthew McAuliffe; Gary Rondeau; Hari Shroff
Journal:  Nat Protoc       Date:  2014-10-09       Impact factor: 13.491

4.  Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy.

Authors:  Yicong Wu; Panagiotis Chandris; Peter W Winter; Edward Y Kim; Valentin Jaumouillé; Abhishek Kumar; Min Guo; Jacqueline M Leung; Corey Smith; Ivan Rey-Suarez; Huafeng Liu; Clare M Waterman; Kumaran S Ramamurthi; Patrick J La Riviere; Hari Shroff
Journal:  Optica       Date:  2016-08-11       Impact factor: 11.104

5.  Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Authors:  Maria Ingaramo; Andrew G York; Eelco Hoogendoorn; Marten Postma; Hari Shroff; George H Patterson
Journal:  Chemphyschem       Date:  2014-01-16       Impact factor: 3.102

6.  A Model-based approach for microvasculature structure distortion correction in two-photon fluorescence microscopy images.

Authors:  Lam Dao; Brian Glancy; Bertrand Lucotte; Lin-Ching Chang; Robert S Balaban; Li-Yueh Hsu
Journal:  J Microsc       Date:  2015-07-29       Impact factor: 1.758

7.  Efficient Bayesian-based multiview deconvolution.

Authors:  Stephan Preibisch; Fernando Amat; Evangelia Stamataki; Mihail Sarov; Robert H Singer; Eugene Myers; Pavel Tomancak
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

8.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Authors:  Yicong Wu; Peter Wawrzusin; Justin Senseney; Robert S Fischer; Ryan Christensen; Anthony Santella; Andrew G York; Peter W Winter; Clare M Waterman; Zhirong Bao; Daniel A Colón-Ramos; Matthew McAuliffe; Hari Shroff
Journal:  Nat Biotechnol       Date:  2013-10-13       Impact factor: 54.908

9.  Rapid image deconvolution and multiview fusion for optical microscopy.

Authors:  Min Guo; Yue Li; Yijun Su; Talley Lambert; Damian Dalle Nogare; Mark W Moyle; Leighton H Duncan; Richard Ikegami; Anthony Santella; Ivan Rey-Suarez; Daniel Green; Anastasia Beiriger; Jiji Chen; Harshad Vishwasrao; Sundar Ganesan; Victoria Prince; Jennifer C Waters; Christina M Annunziata; Markus Hafner; William A Mohler; Ajay B Chitnis; Arpita Upadhyaya; Ted B Usdin; Zhirong Bao; Daniel Colón-Ramos; Patrick La Riviere; Huafeng Liu; Yicong Wu; Hari Shroff
Journal:  Nat Biotechnol       Date:  2020-06-29       Impact factor: 68.164

Review 10.  Towards 3D in silico modeling of the sea urchin embryonic development.

Authors:  Barbara Rizzi; Nadine Peyrieras
Journal:  J Chem Biol       Date:  2013-09-13
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