Literature DB >> 19547131

Multi-view image fusion improves resolution in three-dimensional microscopy.

Jim Swoger, Peter Verveer, Klaus Greger, Jan Huisken, Ernst H K Stelzer.   

Abstract

A non-blind, shift-invariant image processing technique that fuses multi-view three-dimensional image data sets into a single, high quality three-dimensional image is presented. It is effective for 1) improving the resolution and isotropy in images of transparent specimens, and 2) improving the uniformity of the image quality of partially opaque samples. This is demonstrated with fluorescent samples such as Drosophila melanogaster and Medaka embryos and pollen grains imaged by Selective Plane Illumination Microscopy (SPIM). The application of the algorithm to SPIM data yields high-resolution images of organ structure and gene expression, in some cases at a sub-cellular level, throughout specimens ranging from several microns up to a millimeter in size.

Entities:  

Year:  2007        PMID: 19547131     DOI: 10.1364/oe.15.008029

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  60 in total

1.  Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans.

Authors:  Yicong Wu; Alireza Ghitani; Ryan Christensen; Anthony Santella; Zhuo Du; Gary Rondeau; Zhirong Bao; Daniel Colón-Ramos; Hari Shroff
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

2.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

3.  Multiview light-sheet microscope for rapid in toto imaging.

Authors:  Uros Krzic; Stefan Gunther; Timothy E Saunders; Sebastian J Streichan; Lars Hufnagel
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

4.  Software for bead-based registration of selective plane illumination microscopy data.

Authors:  Stephan Preibisch; Stephan Saalfeld; Johannes Schindelin; Pavel Tomancak
Journal:  Nat Methods       Date:  2010-06       Impact factor: 28.547

5.  Whole-animal functional and developmental imaging with isotropic spatial resolution.

Authors:  Raghav K Chhetri; Fernando Amat; Yinan Wan; Burkhard Höckendorf; William C Lemon; Philipp J Keller
Journal:  Nat Methods       Date:  2015-10-26       Impact factor: 28.547

6.  Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope.

Authors:  Zeyi Guan; Juhyun Lee; Hao Jiang; Siyan Dong; Nelson Jen; Tzung Hsiai; Chih-Ming Ho; Peng Fei
Journal:  Biomed Opt Express       Date:  2015-12-21       Impact factor: 3.732

Review 7.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

8.  Light sheet-based fluorescence microscopy: more dimensions, more photons, and less photodamage.

Authors:  Emmanuel G Reynaud; Uros Krzic; Klaus Greger; Ernst H K Stelzer
Journal:  HFSP J       Date:  2008-09-15

9.  Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths.

Authors:  Maria Ingaramo; Andrew G York; Eelco Hoogendoorn; Marten Postma; Hari Shroff; George H Patterson
Journal:  Chemphyschem       Date:  2014-01-16       Impact factor: 3.102

10.  Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities.

Authors:  Elizabeth A Smith; Bertrand P Cinquin; Gerry McDermott; Mark A Le Gros; Dilworth Y Parkinson; Hong Tae Kim; Carolyn A Larabell
Journal:  J Struct Biol       Date:  2013-03-24       Impact factor: 2.867

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