Literature DB >> 24322202

Exploitation of the Streptomyces coelicolor A3(2) genome sequence for discovery of new natural products and biosynthetic pathways.

Gregory L Challis1.   

Abstract

Streptomyces, and related genera of Actinobacteria, are renowned for their ability to produce antibiotics and other bioactive natural products with a wide range of applications in medicine and agriculture. Streptomyces coelicolor A3(2) is a model organism that has been used for more than five decades to study the genetic and biochemical basis for the production of bioactive metabolites. In 2002, the complete genome sequence of S. coelicolor was published. This greatly accelerated progress in understanding the biosynthesis of metabolites known or suspected to be produced by S. coelicolor and revealed that streptomycetes have far greater potential to produce bioactive natural products than suggested by classical bioassay-guided isolation studies. In this article, efforts to exploit the S. coelicolor genome sequence for the discovery of novel natural products and biosynthetic pathways are summarized.

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Year:  2013        PMID: 24322202     DOI: 10.1007/s10295-013-1383-2

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  67 in total

1.  Light-induced carotenogenesis in Streptomyces coelicolor A3(2): identification of an extracytoplasmic function sigma factor that directs photodependent transcription of the carotenoid biosynthesis gene cluster.

Authors:  Hideaki Takano; Saemi Obitsu; Teruhiko Beppu; Kenji Ueda
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

Review 2.  Genomic basis for natural product biosynthetic diversity in the actinomycetes.

Authors:  Markus Nett; Haruo Ikeda; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2009-09-01       Impact factor: 13.423

3.  Streptomyces coelicolor A3(2) plasmid SCP2*: deductions from the complete sequence.

Authors:  Iris Haug; Anke Weissenborn; Dirk Brolle; Stephen Bentley; Tobias Kieser; Josef Altenbuchner
Journal:  Microbiology       Date:  2003-02       Impact factor: 2.777

4.  Cloning and expression in a heterologous host of the complete set of genes for biosynthesis of the Streptomyces coelicolor antibiotic undecylprodigiosin.

Authors:  F Malpartida; J Niemi; R Navarrete; D A Hopwood
Journal:  Gene       Date:  1990-09-01       Impact factor: 3.688

5.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

6.  CDA is a new chromosomally-determined antibiotic from Streptomyces coelicolor A3(2).

Authors:  D A Hopwood; H M Wright
Journal:  J Gen Microbiol       Date:  1983-12

7.  A pigmented mycelial antibiotic in Streptomyces coelicolor: control by a chromosomal gene cluster.

Authors:  B A Rudd; D A Hopwood
Journal:  J Gen Microbiol       Date:  1980-08

8.  SCP1, a 356,023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2).

Authors:  S D Bentley; S Brown; L D Murphy; D E Harris; M A Quail; J Parkhill; B G Barrell; J R McCormick; R I Santamaria; R Losick; M Yamasaki; H Kinashi; C W Chen; G Chandra; D Jakimowicz; H M Kieser; T Kieser; K F Chater
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

9.  ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize gamma-butyrolactones.

Authors:  Nai-Hua Hsiao; Johannes Söding; Dirk Linke; Corinna Lange; Christian Hertweck; Wolfgang Wohlleben; Eriko Takano
Journal:  Microbiology       Date:  2007-05       Impact factor: 2.777

10.  Expression and characterization of the type III polyketide synthase 1,3,6,8-tetrahydroxynaphthalene synthase from Streptomyces coelicolor A3(2).

Authors:  Miho Izumikawa; Paul R Shipley; Jörn N Hopke; Thomas O'Hare; Longkuan Xiang; Joseph P Noel; Bradley S Moore
Journal:  J Ind Microbiol Biotechnol       Date:  2003-08-07       Impact factor: 3.346

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  30 in total

Review 1.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

Review 2.  Natural product discovery: past, present, and future.

Authors:  Leonard Katz; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01-06       Impact factor: 3.346

3.  Structuring Microbial Metabolic Responses to Multiplexed Stimuli via Self-Organizing Metabolomics Maps.

Authors:  Cody R Goodwin; Brett C Covington; Dagmara K Derewacz; C Ruth McNees; John P Wikswo; John A McLean; Brian O Bachmann
Journal:  Chem Biol       Date:  2015-04-30

Review 4.  Insights into microbial cryptic gene activation and strain improvement: principle, application and technical aspects.

Authors:  Kozo Ochi
Journal:  J Antibiot (Tokyo)       Date:  2016-07-06       Impact factor: 2.649

Review 5.  Advancement in bioprocess technology: parallels between microbial natural products and cell culture biologics.

Authors:  Arpan A Bandyopadhyay; Anurag Khetan; Li-Hong Malmberg; Weichang Zhou; Wei-Shou Hu
Journal:  J Ind Microbiol Biotechnol       Date:  2017-02-09       Impact factor: 3.346

Review 6.  Heterologous expression-facilitated natural products' discovery in actinomycetes.

Authors:  Min Xu; Gerard D Wright
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-16       Impact factor: 3.346

Review 7.  Gifted microbes for genome mining and natural product discovery.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-08-12       Impact factor: 3.346

8.  MarH, a Bifunctional Enzyme Involved in the Condensation and Hydroxylation Steps of the Marineosin Biosynthetic Pathway.

Authors:  Wanli Lu; Papireddy Kancharla; Kevin A Reynolds
Journal:  Org Lett       Date:  2017-03-08       Impact factor: 6.005

Review 9.  Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

Authors:  Brian O Bachmann; Steven G Van Lanen; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-12-17       Impact factor: 3.346

Review 10.  Discovery of microbial natural products by activation of silent biosynthetic gene clusters.

Authors:  Peter J Rutledge; Gregory L Challis
Journal:  Nat Rev Microbiol       Date:  2015-06-29       Impact factor: 60.633

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