Literature DB >> 24342967

Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

Brian O Bachmann1, Steven G Van Lanen, Richard H Baltz.   

Abstract

Microbial genome mining is a rapidly developing approach to discover new and novel secondary metabolites for drug discovery. Many advances have been made in the past decade to facilitate genome mining, and these are reviewed in this Special Issue of the Journal of Industrial Microbiology and Biotechnology. In this Introductory Review, we discuss the concept of genome mining and why it is important for the revitalization of natural product discovery; what microbes show the most promise for focused genome mining; how microbial genomes can be mined; how genome mining can be leveraged with other technologies; how progress on genome mining can be accelerated; and who should fund future progress in this promising field. We direct interested readers to more focused reviews on the individual topics in this Special Issue for more detailed summaries on the current state-of-the-art.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24342967      PMCID: PMC4070288          DOI: 10.1007/s10295-013-1389-9

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  71 in total

Review 1.  Myxobacterial secondary metabolites: bioactivities and modes-of-action.

Authors:  Kira J Weissman; Rolf Müller
Journal:  Nat Prod Rep       Date:  2010-06-03       Impact factor: 13.423

2.  Genomics and the ancient origins of the daptomycin biosynthetic gene cluster.

Authors:  Richard H Baltz
Journal:  J Antibiot (Tokyo)       Date:  2010-07-21       Impact factor: 2.649

3.  Microbial genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example.

Authors:  James B McAlpine; Brian O Bachmann; Mahmood Piraee; Steve Tremblay; Anne-Marie Alarco; Emmanuel Zazopoulos; Chris M Farnet
Journal:  J Nat Prod       Date:  2005-04       Impact factor: 4.050

Review 4.  Microbial natural products: molecular blueprints for antitumor drugs.

Authors:  Lesley-Ann Giddings; David J Newman
Journal:  J Ind Microbiol Biotechnol       Date:  2013-09-03       Impact factor: 3.346

Review 5.  Genomic basis for natural product biosynthetic diversity in the actinomycetes.

Authors:  Markus Nett; Haruo Ikeda; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2009-09-01       Impact factor: 13.423

Review 6.  Combinatorial biosynthesis of cyclic lipopeptide antibiotics: a model for synthetic biology to accelerate the evolution of secondary metabolite biosynthetic pathways.

Authors:  Richard H Baltz
Journal:  ACS Synth Biol       Date:  2012-08-23       Impact factor: 5.110

Review 7.  Combinatorial biosynthesis of polyketides--a perspective.

Authors:  Fong T Wong; Chaitan Khosla
Journal:  Curr Opin Chem Biol       Date:  2012-02-16       Impact factor: 8.822

8.  Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca.

Authors:  Karsten Temme; Dehua Zhao; Christopher A Voigt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

9.  Platensimycin is a selective FabF inhibitor with potent antibiotic properties.

Authors:  Jun Wang; Stephen M Soisson; Katherine Young; Wesley Shoop; Srinivas Kodali; Andrew Galgoci; Ronald Painter; Gopalakrishnan Parthasarathy; Yui S Tang; Richard Cummings; Sookhee Ha; Karen Dorso; Mary Motyl; Hiranthi Jayasuriya; John Ondeyka; Kithsiri Herath; Chaowei Zhang; Lorraine Hernandez; John Allocco; Angela Basilio; José R Tormo; Olga Genilloud; Francisca Vicente; Fernando Pelaez; Lawrence Colwell; Sang Ho Lee; Bruce Michael; Thomas Felcetto; Charles Gill; Lynn L Silver; Jeffery D Hermes; Ken Bartizal; John Barrett; Dennis Schmatz; Joseph W Becker; Doris Cully; Sheo B Singh
Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

10.  Merochlorins A-D, cyclic meroterpenoid antibiotics biosynthesized in divergent pathways with vanadium-dependent chloroperoxidases.

Authors:  Leonard Kaysser; Peter Bernhardt; Sang-Jip Nam; Sandra Loesgen; J Graham Ruby; Peter Skewes-Cox; Paul R Jensen; William Fenical; Bradley S Moore
Journal:  J Am Chem Soc       Date:  2012-07-12       Impact factor: 15.419

View more
  103 in total

Review 1.  Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era.

Authors:  Kenton J Hetrick; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2017-03-02       Impact factor: 8.822

Review 2.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

3.  Evolution of chemical diversity by coordinated gene swaps in type II polyketide gene clusters.

Authors:  Maureen E Hillenmeyer; Gergana A Vandova; Erin E Berlew; Louise K Charkoudian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

Review 4.  Natural product discovery: past, present, and future.

Authors:  Leonard Katz; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01-06       Impact factor: 3.346

5.  From the New Editor-in-Chief.

Authors:  Ramon Gonzalez
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01       Impact factor: 3.346

6.  Informatic search strategies to discover analogues and variants of natural product archetypes.

Authors:  Chad W Johnston; Alex D Connaty; Michael A Skinnider; Yong Li; Alyssa Grunwald; Morgan A Wyatt; Russell G Kerr; Nathan A Magarvey
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-08       Impact factor: 3.346

7.  Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes.

Authors:  Gudan Xu; Liyuan Kong; Rong Gong; Liudong Xu; Yaojie Gao; Ming Jiang; You-Sheng Cai; Kui Hong; Youcai Hu; Peng Liu; Zixin Deng; Neil P J Price; Wenqing Chen
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

Review 8.  Possible drugs for the treatment of bacterial infections in the future: anti-virulence drugs.

Authors:  Hiroshi Ogawara
Journal:  J Antibiot (Tokyo)       Date:  2020-07-09       Impact factor: 2.649

Review 9.  An Analysis of Biosynthesis Gene Clusters and Bioactivity of Marine Bacterial Symbionts.

Authors:  Nadarajan Viju; Stanislaus Mary Josephine Punitha; Sathianeson Satheesh
Journal:  Curr Microbiol       Date:  2021-05-26       Impact factor: 2.188

10.  Reinvigorating natural product combinatorial biosynthesis with synthetic biology.

Authors:  Eunji Kim; Bradley S Moore; Yeo Joon Yoon
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.