Literature DB >> 12000953

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

S D Bentley1, K F Chater, A-M Cerdeño-Tárraga, G L Challis, N R Thomson, K D James, D E Harris, M A Quail, H Kieser, D Harper, A Bateman, S Brown, G Chandra, C W Chen, M Collins, A Cronin, A Fraser, A Goble, J Hidalgo, T Hornsby, S Howarth, C-H Huang, T Kieser, L Larke, L Murphy, K Oliver, S O'Neil, E Rabbinowitsch, M-A Rajandream, K Rutherford, S Rutter, K Seeger, D Saunders, S Sharp, R Squares, S Squares, K Taylor, T Warren, A Wietzorrek, J Woodward, B G Barrell, J Parkhill, D A Hopwood.   

Abstract

Streptomyces coelicolor is a representative of the group of soil-dwelling, filamentous bacteria responsible for producing most natural antibiotics used in human and veterinary medicine. Here we report the 8,667,507 base pair linear chromosome of this organism, containing the largest number of genes so far discovered in a bacterium. The 7,825 predicted genes include more than 20 clusters coding for known or predicted secondary metabolites. The genome contains an unprecedented proportion of regulatory genes, predominantly those likely to be involved in responses to external stimuli and stresses, and many duplicated gene sets that may represent 'tissue-specific' isoforms operating in different phases of colonial development, a unique situation for a bacterium. An ancient synteny was revealed between the central 'core' of the chromosome and the whole chromosome of pathogens Mycobacterium tuberculosis and Corynebacterium diphtheriae. The genome sequence will greatly increase our understanding of microbial life in the soil as well as aiding the generation of new drug candidates by genetic engineering.

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Year:  2002        PMID: 12000953     DOI: 10.1038/417141a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  1048 in total

1.  Dereplication of Streptomyces soil isolates and detection of specific biosynthetic genes using an automated ribotyping instrument.

Authors:  F V Ritacco; B Haltli; J E Janso; M Greenstein; V S Bernan
Journal:  J Ind Microbiol Biotechnol       Date:  2003-04-05       Impact factor: 3.346

Review 2.  Streptomyces genes: from Waksman to Sanger.

Authors:  David A Hopwood
Journal:  J Ind Microbiol Biotechnol       Date:  2003-04-05       Impact factor: 3.346

3.  In Salmonella enterica, the Gcn5-related acetyltransferase MddA (formerly YncA) acetylates methionine sulfoximine and methionine sulfone, blocking their toxic effects.

Authors:  Kristy L Hentchel; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2014-11-03       Impact factor: 3.490

Review 4.  Streptomyces temperate bacteriophage integration systems for stable genetic engineering of actinomycetes (and other organisms).

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2011-12-13       Impact factor: 3.346

5.  Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture.

Authors:  Louise Thomas; David A Hodgson; Alexander Wentzel; Kay Nieselt; Trond E Ellingsen; Jonathan Moore; Edward R Morrissey; Roxane Legaie; Wolfgang Wohlleben; Antonio Rodríguez-García; Juan F Martín; Nigel J Burroughs; Elizabeth M H Wellington; Margaret C M Smith
Journal:  Mol Cell Proteomics       Date:  2011-12-06       Impact factor: 5.911

6.  Genome mining in Streptomyces avermitilis: cloning and characterization of SAV_76, the synthase for a new sesquiterpene, avermitilol.

Authors:  Wayne K W Chou; Immacolata Fanizza; Takuma Uchiyama; Mamoru Komatsu; Haruo Ikeda; David E Cane
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

7.  DNA polymerase I is not required for replication of linear chromosomes in streptomyces.

Authors:  Tzu-Wen Huang; Carton W Chen
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

Review 8.  Exploitation of the Streptomyces coelicolor A3(2) genome sequence for discovery of new natural products and biosynthetic pathways.

Authors:  Gregory L Challis
Journal:  J Ind Microbiol Biotechnol       Date:  2013-12-10       Impact factor: 3.346

9.  Streptomyces coelicolor A3(2) lacks a genomic island present in the chromosome of Streptomyces lividans 66.

Authors:  Xiufen Zhou; Xinyi He; Aiying Li; Fang Lei; Tobias Kieser; Zixin Deng
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

10.  Cloning and engineering of the cinnamycin biosynthetic gene cluster from Streptomyces cinnamoneus cinnamoneus DSM 40005.

Authors:  D A Widdick; H M Dodd; P Barraille; J White; T H Stein; K F Chater; M J Gasson; M J Bibb
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

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