Literature DB >> 26119570

Discovery of microbial natural products by activation of silent biosynthetic gene clusters.

Peter J Rutledge1, Gregory L Challis2.   

Abstract

Microorganisms produce a wealth of structurally diverse specialized metabolites with a remarkable range of biological activities and a wide variety of applications in medicine and agriculture, such as the treatment of infectious diseases and cancer, and the prevention of crop damage. Genomics has revealed that many microorganisms have far greater potential to produce specialized metabolites than was thought from classic bioactivity screens; however, realizing this potential has been hampered by the fact that many specialized metabolite biosynthetic gene clusters (BGCs) are not expressed in laboratory cultures. In this Review, we discuss the strategies that have been developed in bacteria and fungi to identify and induce the expression of such silent BGCs, and we briefly summarize methods for the isolation and structural characterization of their metabolic products.

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Year:  2015        PMID: 26119570     DOI: 10.1038/nrmicro3496

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  135 in total

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Review 3.  Regulation of secondary metabolism in streptomycetes.

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5.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

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6.  Genomic mining for Aspergillus natural products.

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Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

Review 8.  The long-overlooked enzymology of a nonribosomal peptide synthetase-independent pathway for virulence-conferring siderophore biosynthesis.

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  253 in total

Review 1.  Taxonomy, Physiology, and Natural Products of Actinobacteria.

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Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

2.  Ligninolytic enzymes production during polycyclic aromatic hydrocarbons degradation: effect of soil pH, soil amendments and fungal co-cultivation.

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Journal:  Biodegradation       Date:  2021-03-16       Impact factor: 3.909

3.  Activation and discovery of tsukubarubicin from Streptomyces tsukubaensis through overexpressing SARPs.

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Journal:  Appl Microbiol Biotechnol       Date:  2021-05-22       Impact factor: 4.813

4.  Atolypenes, Tricyclic Bacterial Sesterterpenes Discovered Using a Multiplexed In Vitro Cas9-TAR Gene Cluster Refactoring Approach.

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Journal:  ACS Synth Biol       Date:  2018-12-21       Impact factor: 5.110

Review 5.  Advances in microbial culturing conditions to activate silent biosynthetic gene clusters for novel metabolite production.

Authors:  Hailey A Tomm; Lorena Ucciferri; Avena C Ross
Journal:  J Ind Microbiol Biotechnol       Date:  2019-06-08       Impact factor: 3.346

Review 6.  An Analysis of Biosynthesis Gene Clusters and Bioactivity of Marine Bacterial Symbionts.

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Review 7.  Deep learning approaches for natural product discovery from plant endophytic microbiomes.

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Journal:  Environ Microbiome       Date:  2021-03-18

8.  Phylogeny-Guided Approach Yields Glycopeptides with Unique Action.

Authors:  Ana V Cheng; William M Wuest
Journal:  Trends Pharmacol Sci       Date:  2020-04-01       Impact factor: 14.819

Review 9.  Accessing Bioactive Natural Products from the Human Microbiome.

Authors:  Aleksandr Milshteyn; Dominic A Colosimo; Sean F Brady
Journal:  Cell Host Microbe       Date:  2018-06-13       Impact factor: 21.023

10.  Multiplexed CRISPR/Cas9- and TAR-Mediated Promoter Engineering of Natural Product Biosynthetic Gene Clusters in Yeast.

Authors:  Hahk-Soo Kang; Zachary Charlop-Powers; Sean F Brady
Journal:  ACS Synth Biol       Date:  2016-06-10       Impact factor: 5.110

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