Literature DB >> 24302669

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives.

Jyotishman Pathak1, Abel N Kho, Joshua C Denny.   

Abstract

Mesh：

Year:  2013        PMID： 24302669      PMCID： PMC3861925          DOI： 10.1136/amiajnl-2013-002428

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN： 1067-5027            Impact factor:   4.497


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  107 in total

1.  Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification.

Authors:  Vijay N Garla; Cynthia Brandt
Journal:  J Am Med Inform Assoc       Date:  2012-10-16       Impact factor: 4.497

2.  An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.

Authors:  Yan Xu; Yining Wang; Tianren Liu; Junichi Tsujii; Eric I-Chao Chang
Journal:  J Am Med Inform Assoc       Date:  2013-03-06       Impact factor: 4.497

3.  Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification.

Authors:  Sunghwan Sohn; Kavishwar B Wagholikar; Dingcheng Li; Siddhartha R Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2013-04-04       Impact factor: 4.497

4.  A hybrid system for temporal information extraction from clinical text.

Authors:  Buzhou Tang; Yonghui Wu; Min Jiang; Yukun Chen; Joshua C Denny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2013-04-09       Impact factor: 4.497

Review 5.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

6.  Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives.

Authors:  Aleksandar Kovacevic; Azad Dehghan; Michele Filannino; John A Keane; Goran Nenadic
Journal:  J Am Med Inform Assoc       Date:  2013-04-20       Impact factor: 4.497

7.  A rule based solution to co-reference resolution in clinical text.

Authors:  Ping Chen; David Hinote; Guoqing Chen
Journal:  J Am Med Inform Assoc       Date:  2012-10-11       Impact factor: 4.497

8.  A la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge.

Authors:  Colin Cherry; Xiaodan Zhu; Joel Martin; Berry de Bruijn
Journal:  J Am Med Inform Assoc       Date:  2013-03-23       Impact factor: 4.497

9.  A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction.

Authors:  Qi Li; Haijun Zhai; Louise Deleger; Todd Lingren; Megan Kaiser; Laura Stoutenborough; Imre Solti
Journal:  J Am Med Inform Assoc       Date:  2012-12-25       Impact factor: 4.497

10.  Towards comprehensive syntactic and semantic annotations of the clinical narrative.

Authors:  Daniel Albright; Arrick Lanfranchi; Anwen Fredriksen; William F Styler; Colin Warner; Jena D Hwang; Jinho D Choi; Dmitriy Dligach; Rodney D Nielsen; James Martin; Wayne Ward; Martha Palmer; Guergana K Savova
Journal:  J Am Med Inform Assoc       Date:  2013-01-25       Impact factor: 4.497
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  103 in total

1.  A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases.

Authors:  Christopher Kotfila; Özlem Uzuner
Journal:  J Biomed Inform       Date:  2015-08-01       Impact factor: 6.317

2.  Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

Authors:  Guoqian Jiang; Richard C Kiefer; Luke V Rasmussen; Harold R Solbrig; Huan Mo; Jennifer A Pacheco; Jie Xu; Enid Montague; William K Thompson; Joshua C Denny; Christopher G Chute; Jyotishman Pathak
Journal:  J Biomed Inform       Date:  2016-07-05       Impact factor: 6.317

3.  Use of emergency department electronic medical records for automated epidemiological surveillance of suicide attempts: a French pilot study.

Authors:  Marie-Hélène Metzger; Nastassia Tvardik; Quentin Gicquel; Côme Bouvry; Emmanuel Poulet; Véronique Potinet-Pagliaroli
Journal:  Int J Methods Psychiatr Res       Date:  2016-09-15       Impact factor: 4.035

4.  Building bridges across electronic health record systems through inferred phenotypic topics.

Authors:  You Chen; Joydeep Ghosh; Cosmin Adrian Bejan; Carl A Gunter; Siddharth Gupta; Abel Kho; David Liebovitz; Jimeng Sun; Joshua Denny; Bradley Malin
Journal:  J Biomed Inform       Date:  2015-04-01       Impact factor: 6.317

5.  R-U policy frontiers for health data de-identification.

Authors:  Weiyi Xia; Raymond Heatherly; Xiaofeng Ding; Jiuyong Li; Bradley A Malin
Journal:  J Am Med Inform Assoc       Date:  2015-04-24       Impact factor: 4.497

6.  Locating relevant patient information in electronic health record data using representations of clinical concepts and database structures.

Authors:  Xuequn Pan; James J Cimino
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

7.  Using Arden Syntax to identify registry-eligible very low birth weight neonates from the Electronic Health Record.

Authors:  Indra Neil Sarkar; Elizabeth S Chen; Paul T Rosenau; Matthew B Storer; Beth Anderson; Jeffrey D Horbar
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

8.  Automated disease cohort selection using word embeddings from Electronic Health Records.

Authors:  Benjamin S Glicksberg; Riccardo Miotto; Kipp W Johnson; Khader Shameer; Li Li; Rong Chen; Joel T Dudley
Journal:  Pac Symp Biocomput       Date:  2018

Review 9.  The intelligent use and clinical benefits of electronic medical records in multiple sclerosis.

Authors:  Mary F Davis; Jonathan L Haines
Journal:  Expert Rev Clin Immunol       Date:  2014-12-11       Impact factor: 4.473

10.  Computable Phenotype Implementation for a National, Multicenter Pragmatic Clinical Trial: Lessons Learned From ADAPTABLE.

Authors:  Faraz S Ahmad; Iben M Ricket; Bradley G Hammill; Lisa Eskenazi; Holly R Robertson; Lesley H Curtis; Cecilia D Dobi; Saket Girotra; Kevin Haynes; Jorge R Kizer; Sunil Kripalani; Mathew T Roe; Christianne L Roumie; Russ Waitman; W Schuyler Jones; Mark G Weiner
Journal:  Circ Cardiovasc Qual Outcomes       Date:  2020-05-29
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