Literature DB >> 27634457

Use of emergency department electronic medical records for automated epidemiological surveillance of suicide attempts: a French pilot study.

Marie-Hélène Metzger1,2, Nastassia Tvardik1, Quentin Gicquel3,4, Côme Bouvry3,4, Emmanuel Poulet3,5,6, Véronique Potinet-Pagliaroli7.   

Abstract

The aim of this study was to determine whether an expert system based on automated processing of electronic health records (EHRs) could provide a more accurate estimate of the annual rate of emergency department (ED) visits for suicide attempts in France, as compared to the current national surveillance system based on manual coding by emergency practitioners. A feasibility study was conducted at Lyon University Hospital, using data for all ED patient visits in 2012. After automatic data extraction and pre-processing, including automatic coding of medical free-text through use of the Unified Medical Language System, seven different machine-learning methods were used to classify the reasons for ED visits into "suicide attempts" versus "other reasons". The performance of these different methods was compared by using the F-measure. In a test sample of 444 patients admitted to the ED in 2012 (98 suicide attempts, 48 cases of suicidal ideation, and 292 controls with no recorded non-fatal suicidal behaviour), the F-measure for automatic detection of suicide attempts ranged from 70.4% to 95.3%. The random forest and naïve Bayes methods performed best. This study demonstrates that machine-learning methods can improve the quality of epidemiological indicators as compared to current national surveillance of suicide attempts.
Copyright © 2016 John Wiley & Sons, Ltd.

Entities:  

Keywords:  attempted suicide; emergency service; machine learning; natural language processing; population surveillance

Mesh:

Year:  2016        PMID: 27634457      PMCID: PMC6877202          DOI: 10.1002/mpr.1522

Source DB:  PubMed          Journal:  Int J Methods Psychiatr Res        ISSN: 1049-8931            Impact factor:   4.035


  20 in total

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2.  Electronic health records-driven phenotyping: challenges, recent advances, and perspectives.

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4.  Enhanced identification of eligibility for depression research using an electronic medical record search engine.

Authors:  Lisa Seyfried; David A Hanauer; Donald Nease; Rashad Albeiruti; Janet Kavanagh; Helen C Kales
Journal:  Int J Med Inform       Date:  2009-06-27       Impact factor: 4.046

5.  A knowledge discovery and reuse pipeline for information extraction in clinical notes.

Authors:  Jon D Patrick; Dung H M Nguyen; Yefeng Wang; Min Li
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6.  Effect of telephone contact on further suicide attempts in patients discharged from an emergency department: randomised controlled study.

Authors:  Guillaume Vaiva; Guillaume Vaiva; François Ducrocq; Philippe Meyer; Daniel Mathieu; Alain Philippe; Christian Libersa; Michel Goudemand
Journal:  BMJ       Date:  2006-05-27

7.  Carrell et al. respond to "Observational research and the EHR".

Authors:  David S Carrell; Scott Halgrim; Diem-Thy Tran; Diana S M Buist; Jessica Chubak; Wendy W Chapman; Guergana Savova
Journal:  Am J Epidemiol       Date:  2014-01-30       Impact factor: 4.897

8.  Invited commentary: Observational research in the age of the electronic health record.

Authors:  Christopher G Chute
Journal:  Am J Epidemiol       Date:  2014-01-30       Impact factor: 4.897

9.  Evaluating predictive modeling's potential to improve teleretinal screening participation in urban safety net clinics.

Authors:  Omolola Ogunyemi; Senait Teklehaimanot; Lauren Patty; Erin Moran; Sheba George
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1.  Selection of Clinical Text Features for Classifying Suicide Attempts.

Authors:  Ryan S Buckland; Joseph W Hogan; Elizabeth S Chen
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2.  Prediction of Sex-Specific Suicide Risk Using Machine Learning and Single-Payer Health Care Registry Data From Denmark.

Authors:  Jaimie L Gradus; Anthony J Rosellini; Erzsébet Horváth-Puhó; Amy E Street; Isaac Galatzer-Levy; Tammy Jiang; Timothy L Lash; Henrik T Sørensen
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Authors:  Qiu-Yue Zhong; Elizabeth W Karlson; Bizu Gelaye; Sean Finan; Paul Avillach; Jordan W Smoller; Tianxi Cai; Michelle A Williams
Journal:  BMC Med Inform Decis Mak       Date:  2018-05-29       Impact factor: 2.796

6.  Risk Assessment Tools and Data-Driven Approaches for Predicting and Preventing Suicidal Behavior.

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Journal:  Front Psychiatry       Date:  2019-02-13       Impact factor: 4.157

7.  Supporting the classification of patients in public hospitals in Chile by designing, deploying and validating a system based on natural language processing.

Authors:  Jocelyn Dunstan; Fabián Villena; Jorge Pérez; René Lagos
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Review 8.  Clinical Natural Language Processing in languages other than English: opportunities and challenges.

Authors:  Aurélie Névéol; Hercules Dalianis; Sumithra Velupillai; Guergana Savova; Pierre Zweigenbaum
Journal:  J Biomed Semantics       Date:  2018-03-30

9.  Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing.

Authors:  Andrea C Fernandes; Rina Dutta; Sumithra Velupillai; Jyoti Sanyal; Robert Stewart; David Chandran
Journal:  Sci Rep       Date:  2018-05-09       Impact factor: 4.379

10.  National Ambulance Surveillance System: A novel method using coded Australian ambulance clinical records to monitor self-harm and mental health-related morbidity.

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Journal:  PLoS One       Date:  2020-07-31       Impact factor: 3.240

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