Literature DB >> 27392645

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

Guoqian Jiang1, Richard C Kiefer2, Luke V Rasmussen3, Harold R Solbrig2, Huan Mo4, Jennifer A Pacheco5, Jie Xu6, Enid Montague7, William K Thompson8, Joshua C Denny9, Christopher G Chute10, Jyotishman Pathak11.   

Abstract

The Quality Data Model (QDM) is an information model developed by the National Quality Forum for representing electronic health record (EHR)-based electronic clinical quality measures (eCQMs). In conjunction with the HL7 Health Quality Measures Format (HQMF), QDM contains core elements that make it a promising model for representing EHR-driven phenotype algorithms for clinical research. However, the current QDM specification is available only as descriptive documents suitable for human readability and interpretation, but not for machine consumption. The objective of the present study is to develop and evaluate a data element repository (DER) for providing machine-readable QDM data element service APIs to support phenotype algorithm authoring and execution. We used the ISO/IEC 11179 metadata standard to capture the structure for each data element, and leverage Semantic Web technologies to facilitate semantic representation of these metadata. We observed there are a number of underspecified areas in the QDM, including the lack of model constraints and pre-defined value sets. We propose a harmonization with the models developed in HL7 Fast Healthcare Interoperability Resources (FHIR) and Clinical Information Modeling Initiatives (CIMI) to enhance the QDM specification and enable the extensibility and better coverage of the DER. We also compared the DER with the existing QDM implementation utilized within the Measure Authoring Tool (MAT) to demonstrate the scalability and extensibility of our DER-based approach.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  HL7 Fast Healthcare Interoperability Resources (FHIR); Metadata standards; Phenotype algorithms; Quality Data Model (QDM); Semantic Web technology

Mesh:

Year:  2016        PMID: 27392645      PMCID: PMC5490836          DOI: 10.1016/j.jbi.2016.07.008

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  22 in total

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Authors:  J Doods; R Bache; M McGilchrist; C Daniel; M Dugas; F Fritz
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2.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

3.  Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.

Authors:  Jyotishman Pathak; Kent R Bailey; Calvin E Beebe; Steven Bethard; David C Carrell; Pei J Chen; Dmitriy Dligach; Cory M Endle; Lacey A Hart; Peter J Haug; Stanley M Huff; Vinod C Kaggal; Dingcheng Li; Hongfang Liu; Kyle Marchant; James Masanz; Timothy Miller; Thomas A Oniki; Martha Palmer; Kevin J Peterson; Susan Rea; Guergana K Savova; Craig R Stancl; Sunghwan Sohn; Harold R Solbrig; Dale B Suesse; Cui Tao; David P Taylor; Les Westberg; Stephen Wu; Ning Zhuo; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2013-11-04       Impact factor: 4.497

4.  caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability.

Authors:  George A Komatsoulis; Denise B Warzel; Francis W Hartel; Krishnakant Shanbhag; Ram Chilukuri; Gilberto Fragoso; Sherri de Coronado; Dianne M Reeves; Jillaine B Hadfield; Christophe Ludet; Peter A Covitz
Journal:  J Biomed Inform       Date:  2007-04-02       Impact factor: 6.317

5.  The center for expanded data annotation and retrieval.

Authors:  Mark A Musen; Carol A Bean; Kei-Hoi Cheung; Michel Dumontier; Kim A Durante; Olivier Gevaert; Alejandra Gonzalez-Beltran; Purvesh Khatri; Steven H Kleinstein; Martin J O'Connor; Yannick Pouliot; Philippe Rocca-Serra; Susanna-Assunta Sansone; Jeffrey A Wiser
Journal:  J Am Med Inform Assoc       Date:  2015-06-25       Impact factor: 4.497

Review 6.  The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.

Authors:  Omri Gottesman; Helena Kuivaniemi; Gerard Tromp; W Andrew Faucett; Rongling Li; Teri A Manolio; Saskia C Sanderson; Joseph Kannry; Randi Zinberg; Melissa A Basford; Murray Brilliant; David J Carey; Rex L Chisholm; Christopher G Chute; John J Connolly; David Crosslin; Joshua C Denny; Carlos J Gallego; Jonathan L Haines; Hakon Hakonarson; John Harley; Gail P Jarvik; Isaac Kohane; Iftikhar J Kullo; Eric B Larson; Catherine McCarty; Marylyn D Ritchie; Dan M Roden; Maureen E Smith; Erwin P Böttinger; Marc S Williams
Journal:  Genet Med       Date:  2013-06-06       Impact factor: 8.822

7.  The HMO Research Network Virtual Data Warehouse: A Public Data Model to Support Collaboration.

Authors:  Tyler R Ross; Daniel Ng; Jeffrey S Brown; Roy Pardee; Mark C Hornbrook; Gene Hart; John F Steiner
Journal:  EGEMS (Wash DC)       Date:  2014-03-24

8.  A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution.

Authors:  Guoqian Jiang; Harold R Solbrig; Richard Kiefer; Luke V Rasmussen; Huan Mo; Peter Speltz; William K Thompson; Joshua C Denny; Christopher G Chute; Jyotishman Pathak
Journal:  Stud Health Technol Inform       Date:  2015

9.  A Prototype for Executable and Portable Electronic Clinical Quality Measures Using the KNIME Analytics Platform.

Authors:  Huan Mo; Jennifer A Pacheco; Luke V Rasmussen; Peter Speltz; Jyotishman Pathak; Joshua C Denny; William K Thompson
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2015-03-25

10.  A Modular Architecture for Electronic Health Record-Driven Phenotyping.

Authors:  Luke V Rasmussen; Richard C Kiefer; Huan Mo; Peter Speltz; William K Thompson; Guoqian Jiang; Jennifer A Pacheco; Jie Xu; Qian Zhu; Joshua C Denny; Enid Montague; Jyotishman Pathak
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2015-03-25
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  7 in total

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Authors:  Martin J O'Connor; Denise B Warzel; Marcos Martínez-Romero; Josef Hardi; Debra Willrett; Attila L Egyedi; Aras Eftekhari; John Graybeal; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

Review 2.  Clinical Research Informatics: Contributions from 2016.

Authors:  C Daniel; R Choquet
Journal:  Yearb Med Inform       Date:  2017-09-11

3.  Defining Phenotypes from Clinical Data to Drive Genomic Research.

Authors:  Jamie R Robinson; Wei-Qi Wei; Dan M Roden; Joshua C Denny
Journal:  Annu Rev Biomed Data Sci       Date:  2018-04-25

Review 4.  HL7 FHIR-based tools and initiatives to support clinical research: a scoping review.

Authors:  Stephany N Duda; Nan Kennedy; Douglas Conway; Alex C Cheng; Viet Nguyen; Teresa Zayas-Cabán; Paul A Harris
Journal:  J Am Med Inform Assoc       Date:  2022-08-16       Impact factor: 7.942

5.  Facilitating the design of HL7 domain models through a model-driven solution.

Authors:  M A Olivero; F J Domínguez-Mayo; C L Parra-Calderón; M J Escalona; A Martínez-García
Journal:  BMC Med Inform Decis Mak       Date:  2020-05-25       Impact factor: 2.796

6.  UK phenomics platform for developing and validating electronic health record phenotypes: CALIBER.

Authors:  Spiros Denaxas; Arturo Gonzalez-Izquierdo; Kenan Direk; Natalie K Fitzpatrick; Ghazaleh Fatemifar; Amitava Banerjee; Richard J B Dobson; Laurence J Howe; Valerie Kuan; R Tom Lumbers; Laura Pasea; Riyaz S Patel; Anoop D Shah; Aroon D Hingorani; Cathie Sudlow; Harry Hemingway
Journal:  J Am Med Inform Assoc       Date:  2019-12-01       Impact factor: 4.497

7.  Accuracy of Asthma Computable Phenotypes to Identify Pediatric Asthma at an Academic Institution.

Authors:  Mindy K Ross; Henry Zheng; Bing Zhu; Ailina Lao; Hyejin Hong; Alamelu Natesan; Melina Radparvar; Alex A T Bui
Journal:  Methods Inf Med       Date:  2021-07-14       Impact factor: 1.800

  7 in total

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