Literature DB >> 24296168

Translesion DNA synthesis and mutagenesis in prokaryotes.

Robert P Fuchs1, Shingo Fujii.   

Abstract

The presence of unrepaired lesions in DNA represents a challenge for replication. Most, but not all, DNA lesions block the replicative DNA polymerases. The conceptually simplest procedure to bypass lesions during DNA replication is translesion synthesis (TLS), whereby the replicative polymerase is transiently replaced by a specialized DNA polymerase that synthesizes a short patch of DNA across the site of damage. This process is inherently error prone and is the main source of point mutations. The diversity of existing DNA lesions and the biochemical properties of Escherichia coli DNA polymerases will be presented. Our main goal is to deliver an integrated view of TLS pathways involving the multiple switches between replicative and specialized DNA polymerases and their interaction with key accessory factors. Finally, a brief glance at how other bacteria deal with TLS and mutagenesis is presented.

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Year:  2013        PMID: 24296168      PMCID: PMC3839610          DOI: 10.1101/cshperspect.a012682

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  126 in total

1.  A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously.

Authors:  Chiara Indiani; Peter McInerney; Roxana Georgescu; Myron F Goodman; Mike O'Donnell
Journal:  Mol Cell       Date:  2005-09-16       Impact factor: 17.970

Review 2.  Y-family DNA polymerases in Escherichia coli.

Authors:  Daniel F Jarosz; Penny J Beuning; Susan E Cohen; Graham C Walker
Journal:  Trends Microbiol       Date:  2007-01-04       Impact factor: 17.079

3.  Maintaining replication fork integrity in UV-irradiated Escherichia coli cells.

Authors:  Christian J Rudolph; Amy L Upton; Robert G Lloyd
Journal:  DNA Repair (Amst)       Date:  2008-07-26

Review 4.  DNA replicases from a bacterial perspective.

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Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

5.  A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode.

Authors:  Slobodan Jergic; Nicholas P Horan; Mohamed M Elshenawy; Claire E Mason; Thitima Urathamakul; Kiyoshi Ozawa; Andrew Robinson; Joris M H Goudsmits; Yao Wang; Xuefeng Pan; Jennifer L Beck; Antoine M van Oijen; Thomas Huber; Samir M Hamdan; Nicholas E Dixon
Journal:  EMBO J       Date:  2013-02-22       Impact factor: 11.598

6.  Influence of RecA protein on induced mutagenesis.

Authors:  M Blanco; G Herrera; P Collado; J E Rebollo; L M Botella
Journal:  Biochimie       Date:  1982 Aug-Sep       Impact factor: 4.079

7.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

8.  Escherichia coli strains (ndk) lacking nucleoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair-deficient strains.

Authors:  Jeffrey H Miller; Pauline Funchain; Wendy Clendenin; Tiffany Huang; Anh Nguyen; Erika Wolff; Annie Yeung; Ju-Huei Chiang; Lilit Garibyan; Malgorzata M Slupska; Hanjing Yang
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

9.  On the mechanism of frameshift (deletion) mutagenesis in vitro.

Authors:  S Shibutani; A P Grollman
Journal:  J Biol Chem       Date:  1993-06-05       Impact factor: 5.157

10.  An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus.

Authors:  Rodrigo S Galhardo; Raquel P Rocha; Marilis V Marques; Carlos F M Menck
Journal:  Nucleic Acids Res       Date:  2005-05-10       Impact factor: 16.971

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  59 in total

1.  Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Authors:  Patricia L Foster; Heewook Lee; Ellen Popodi; Jesse P Townes; Haixu Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

Review 2.  DNA damage responses in prokaryotes: regulating gene expression, modulating growth patterns, and manipulating replication forks.

Authors:  Kenneth N Kreuzer
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

3.  Roles of Bacillus subtilis RecA, Nucleotide Excision Repair, and Translesion Synthesis Polymerases in Counteracting Cr(VI)-Promoted DNA Damage.

Authors:  Fernando Santos-Escobar; Hilda C Leyva-Sánchez; Norma Ramírez-Ramírez; Armando Obregón-Herrera; Mario Pedraza-Reyes
Journal:  J Bacteriol       Date:  2019-03-26       Impact factor: 3.490

Review 4.  Translesion DNA polymerases in eukaryotes: what makes them tick?

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-03-09       Impact factor: 8.250

5.  Resistance to UV Irradiation Caused by Inactivation of nurA and herA Genes in Thermus thermophilus.

Authors:  Yuki Fujii; Masao Inoue; Kenji Fukui; Seiki Kuramitsu; Ryoji Masui
Journal:  J Bacteriol       Date:  2018-07-25       Impact factor: 3.490

Review 6.  Redundancy in ribonucleotide excision repair: Competition, compensation, and cooperation.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2015-02-16

Review 7.  Specialised DNA polymerases in Escherichia coli: roles within multiple pathways.

Authors:  Sarah S Henrikus; Antoine M van Oijen; Andrew Robinson
Journal:  Curr Genet       Date:  2018-04-26       Impact factor: 3.886

8.  The response of Escherichia coli to the alkylating agents chloroacetaldehyde and styrene oxide.

Authors:  Mark M Muenter; Ariel Aiken; Jadesola O Akanji; Samir Baig; Sirine Bellou; Alyssa Carlson; Charles Conway; Courtney M Cowell; Nicholas A DeLateur; Alexis Hester; Christopher Joshi; Caitlin Kramer; Becky S Leifer; Emma Nash; Macee H Qi; Meghan Travers; Kelly C Wong; Man Hu; Na Gou; Roger W Giese; April Z Gu; Penny J Beuning
Journal:  Mutat Res Genet Toxicol Environ Mutagen       Date:  2019-02-07       Impact factor: 2.873

9.  A gatekeeping function of the replicative polymerase controls pathway choice in the resolution of lesion-stalled replisomes.

Authors:  Seungwoo Chang; Karel Naiman; Elizabeth S Thrall; James E Kath; Slobodan Jergic; Nicholas E Dixon; Robert P Fuchs; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-03       Impact factor: 11.205

10.  The recombination mediator proteins RecFOR maintain RecA* levels for maximal DNA polymerase V Mut activity.

Authors:  Paromita Raychaudhury; Kenneth J Marians
Journal:  J Biol Chem       Date:  2018-11-27       Impact factor: 5.157

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