Literature DB >> 21675919

DNA replicases from a bacterial perspective.

Charles S McHenry1.   

Abstract

Bacterial replicases are complex, tripartite replicative machines. They contain a polymerase, polymerase III (Pol III), a β₂ processivity factor, and a DnaX complex ATPase that loads β₂ onto DNA and chaperones Pol III onto the newly loaded β₂. Bacterial replicases are highly processive, yet cycle rapidly during Okazaki fragment synthesis in a regulated way. Many bacteria encode both a full-length τ and a shorter γ form of DnaX by a variety of mechanisms. γ appears to be uniquely placed in a single position relative to two τ protomers in a pentameric ring. The polymerase catalytic subunit of Pol III, α, contains a PHP domain that not only binds to a prototypical ε Mg²⁺-dependent exonuclease, but also contains a second Zn²⁺-dependent proofreading exonuclease, at least in some bacteria. This review focuses on a critical evaluation of recent literature and concepts pertaining to the above issues and suggests specific areas that require further investigation.

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Year:  2011        PMID: 21675919     DOI: 10.1146/annurev-biochem-061208-091655

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  87 in total

Review 1.  Replication-transcription conflicts in bacteria.

Authors:  Houra Merrikh; Yan Zhang; Alan D Grossman; Jue D Wang
Journal:  Nat Rev Microbiol       Date:  2012-06-06       Impact factor: 60.633

Review 2.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

3.  Escherichia coli DNA polymerase IV (Pol IV), but not Pol II, dynamically switches with a stalled Pol III* replicase.

Authors:  Justin M H Heltzel; Robert W Maul; David W Wolff; Mark D Sutton
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

4.  Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair.

Authors:  Edwin Antony; Elizabeth Weiland; Quan Yuan; Carol M Manhart; Binh Nguyen; Alexander G Kozlov; Charles S McHenry; Timothy M Lohman
Journal:  J Mol Biol       Date:  2013-09-07       Impact factor: 5.469

Review 5.  Replicative DNA polymerases.

Authors:  Erik Johansson; Nicholas Dixon
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

Review 6.  Translesion DNA synthesis and mutagenesis in prokaryotes.

Authors:  Robert P Fuchs; Shingo Fujii
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

7.  The progression of replication forks at natural replication barriers in live bacteria.

Authors:  M Charl Moolman; Sriram Tiruvadi Krishnan; Jacob W J Kerssemakers; Roy de Leeuw; Vincent Lorent; David J Sherratt; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

8.  Mechanisms of Theta Plasmid Replication.

Authors:  Joshua Lilly; Manel Camps
Journal:  Microbiol Spectr       Date:  2015-02

9.  The recombination mediator proteins RecFOR maintain RecA* levels for maximal DNA polymerase V Mut activity.

Authors:  Paromita Raychaudhury; Kenneth J Marians
Journal:  J Biol Chem       Date:  2018-11-27       Impact factor: 5.157

10.  PCNA is efficiently loaded on the DNA recombination intermediate to modulate polymerase δ, η, and ζ activities.

Authors:  Jian Li; Donald L Holzschu; Tomohiko Sugiyama
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

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