Literature DB >> 28279077

Translesion DNA polymerases in eukaryotes: what makes them tick?

Alexandra Vaisman1, Roger Woodgate1.   

Abstract

Life as we know it, simply would not exist without DNA replication. All living organisms utilize a complex machinery to duplicate their genomes and the central role in this machinery belongs to replicative DNA polymerases, enzymes that are specifically designed to copy DNA. "Hassle-free" DNA duplication exists only in an ideal world, while in real life, it is constantly threatened by a myriad of diverse challenges. Among the most pressing obstacles that replicative polymerases often cannot overcome by themselves are lesions that distort the structure of DNA. Despite elaborate systems that cells utilize to cleanse their genomes of damaged DNA, repair is often incomplete. The persistence of DNA lesions obstructing the cellular replicases can have deleterious consequences. One of the mechanisms allowing cells to complete replication is "Translesion DNA Synthesis (TLS)". TLS is intrinsically error-prone, but apparently, the potential downside of increased mutagenesis is a healthier outcome for the cell than incomplete replication. Although most of the currently identified eukaryotic DNA polymerases have been implicated in TLS, the best characterized are those belonging to the "Y-family" of DNA polymerases (pols η, ι, κ and Rev1), which are thought to play major roles in the TLS of persisting DNA lesions in coordination with the B-family polymerase, pol ζ. In this review, we summarize the unique features of these DNA polymerases by mainly focusing on their biochemical and structural characteristics, as well as potential protein-protein interactions with other critical factors affecting TLS regulation.

Entities:  

Keywords:  DNA polymerase families; PCNA; Translesion synthesis; mutagenesis; protein interaction network; replicative bypass; ubiquitin

Mesh:

Substances:

Year:  2017        PMID: 28279077      PMCID: PMC5573590          DOI: 10.1080/10409238.2017.1291576

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  319 in total

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Journal:  Nat Struct Biol       Date:  2001-11

2.  Somatic mutation hotspots correlate with DNA polymerase eta error spectrum.

Authors:  I B Rogozin; Y I Pavlov; K Bebenek; T Matsuda; T A Kunkel
Journal:  Nat Immunol       Date:  2001-06       Impact factor: 25.606

3.  Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin.

Authors:  Daniel Burschowsky; Fabian Rudolf; Gwénaël Rabut; Torsten Herrmann; Matthias Peter; Peter Matthias; Gerhard Wider
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

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Authors:  K C Burtis; P V Harris
Journal:  Curr Biol       Date:  1997-12-01       Impact factor: 10.834

5.  Widespread eukaryotic sequences, highly similar to bacterial DNA polymerase I, looking for functions.

Authors:  E L Sonnhammer; J C Wootton
Journal:  Curr Biol       Date:  1997-08-01       Impact factor: 10.834

6.  Structural insights into the assembly of human translesion polymerase complexes.

Authors:  Wei Xie; Xuan Yang; Min Xu; Tao Jiang
Journal:  Protein Cell       Date:  2012-11-10       Impact factor: 14.870

Review 7.  DNA damage repair and tolerance: a role in chemotherapeutic drug resistance.

Authors:  M R Salehan; H R Morse
Journal:  Br J Biomed Sci       Date:  2013       Impact factor: 3.829

8.  Purification and DNA synthesis in cell-free extracts: properties of DNA polymerase II.

Authors:  T Kornberg; M L Gefter
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

9.  Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes.

Authors:  Daili J A Netz; Carrie M Stith; Martin Stümpfig; Gabriele Köpf; Daniel Vogel; Heide M Genau; Joseph L Stodola; Roland Lill; Peter M J Burgers; Antonio J Pierik
Journal:  Nat Chem Biol       Date:  2011-11-27       Impact factor: 15.040

10.  129-derived strains of mice are deficient in DNA polymerase iota and have normal immunoglobulin hypermutation.

Authors:  John P McDonald; Ekaterina G Frank; Brian S Plosky; Igor B Rogozin; Chikahide Masutani; Fumio Hanaoka; Roger Woodgate; Patricia J Gearhart
Journal:  J Exp Med       Date:  2003-08-18       Impact factor: 14.307

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  91 in total

1.  Error-prone replication of a 5-formylcytosine-mediated DNA-peptide cross-link in human cells.

Authors:  Spandana Naldiga; Shaofei Ji; Jenna Thomforde; Claudia M Nicolae; Marietta Lee; Zhongtao Zhang; George-Lucian Moldovan; Natalia Y Tretyakova; Ashis K Basu
Journal:  J Biol Chem       Date:  2019-05-28       Impact factor: 5.157

Review 2.  DNA-protein crosslinks from environmental exposure: Mechanisms of formation and repair.

Authors:  Yusuke Kojima; Yuichi J Machida
Journal:  Environ Mol Mutagen       Date:  2020-07-09       Impact factor: 3.216

3.  Virtual Pharmacophore Screening Identifies Small-Molecule Inhibitors of the Rev1-CT/RIR Protein-Protein Interaction.

Authors:  Radha C Dash; Zuleyha Ozen; Kaitlyn R McCarthy; Nimrat Chatterjee; Cynthia A Harris; Alessandro A Rizzo; Graham C Walker; Dmitry M Korzhnev; M Kyle Hadden
Journal:  ChemMedChem       Date:  2019-08-21       Impact factor: 3.466

4.  A Small Molecule Targeting Mutagenic Translesion Synthesis Improves Chemotherapy.

Authors:  Jessica L Wojtaszek; Nimrat Chatterjee; Javaria Najeeb; Azucena Ramos; Minhee Lee; Ke Bian; Jenny Y Xue; Benjamin A Fenton; Hyeri Park; Deyu Li; Michael T Hemann; Jiyong Hong; Graham C Walker; Pei Zhou
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

5.  Genotyping DNA isolated from UV irradiated human bloodstains using whole genome amplification.

Authors:  Seisaku Uchigasaki; Jian Tie; Erina Sobashima; Naomi Shimada
Journal:  Mol Biol Rep       Date:  2018-07-07       Impact factor: 2.316

6.  Sml1 Inhibits the DNA Repair Activity of Rev1 in Saccharomyces cerevisiae during Oxidative Stress.

Authors:  Rui Yao; Pei Zhou; Chengjin Wu; Liming Liu; Jing Wu
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

7.  Chk1 loss creates replication barriers that compromise cell survival independently of excess origin firing.

Authors:  Marina A González Besteiro; Nicolás L Calzetta; Sofía M Loureiro; Martín Habif; Rémy Bétous; Marie-Jeanne Pillaire; Antonio Maffia; Simone Sabbioneda; Jean-Sébastien Hoffmann; Vanesa Gottifredi
Journal:  EMBO J       Date:  2019-07-11       Impact factor: 11.598

8.  HLTF Promotes Fork Reversal, Limiting Replication Stress Resistance and Preventing Multiple Mechanisms of Unrestrained DNA Synthesis.

Authors:  Gongshi Bai; Chames Kermi; Henriette Stoy; Carl J Schiltz; Julien Bacal; Angela M Zaino; M Kyle Hadden; Brandt F Eichman; Massimo Lopes; Karlene A Cimprich
Journal:  Mol Cell       Date:  2020-05-21       Impact factor: 17.970

Review 9.  Main steps in DNA double-strand break repair: an introduction to homologous recombination and related processes.

Authors:  Lepakshi Ranjha; Sean M Howard; Petr Cejka
Journal:  Chromosoma       Date:  2018-01-11       Impact factor: 4.316

Review 10.  Mysterious and fascinating: DNA polymerase ɩ remains enigmatic 20 years after its discovery.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2020-09
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