Literature DB >> 10430871

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

M Tang1, X Shen, E G Frank, M O'Donnell, R Woodgate, M F Goodman.   

Abstract

The damage-inducible UmuD' and UmuC proteins are required for most SOS mutagenesis in Escherichia coli. Our recent assay to reconstitute this process in vitro, using a native UmuD'(2)C complex, revealed that the highly purified preparation contained DNA polymerase activity. Here we eliminate the possibility that this activity is caused by a contaminating DNA polymerase and show that it is intrinsic to UmuD'(2)C. E. coli dinB has recently been shown to have DNA polymerase activity (pol IV). We suggest that UmuD'(2)C, the fifth DNA polymerase discovered in E. coli, be designated as E. coli pol V. In the presence of RecA, beta sliding clamp, gamma clamp loading complex, and E. coli single-stranded binding protein (SSB), pol V's polymerase activity is highly "error prone" at both damaged and undamaged DNA template sites, catalyzing efficient bypass of abasic lesions that would otherwise severely inhibit replication by pol III holoenzyme complex (HE). Pol V bypasses a site-directed abasic lesion with an efficiency about 100- to 150-fold higher than pol III HE. In accordance with the "A-rule," dAMP is preferentially incorporated opposite the lesion. A pol V mutant, UmuD'(2)C104 (D101N), has no measurable lesion bypass activity. A kinetic analysis shows that addition of increasing amounts of pol III to a fixed level of pol V inhibits lesion bypass, demonstrating that both enzymes compete for free 3'-OH template-primer ends. We show, however, that despite competition for primer-3'-ends, pol V and pol III HE can nevertheless interact synergistically to stimulate synthesis downstream from a template lesion.

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Year:  1999        PMID: 10430871      PMCID: PMC17708          DOI: 10.1073/pnas.96.16.8919

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  DNA polymerase III of Escherichia coli is required for UV and ethyl methanesulfonate mutagenesis.

Authors:  M E Hagensee; T L Timme; S K Bryan; R E Moses
Journal:  Proc Natl Acad Sci U S A       Date:  1987-06       Impact factor: 11.205

2.  Isolation and characterization of mutants of Escherichia coli deficient in induction of mutations by ultraviolet light.

Authors:  T Kato; Y Shinoura
Journal:  Mol Gen Genet       Date:  1977-11-14

3.  Isolation and characterization of thermosensitive Escherichia coli mutants defective in deoxyribonucleic acid replication.

Authors:  J A Wechsler; V Nüsslein; B Otto; A Klein; F Bonhoeffer; R Herrmann; L Gloger; H Schaller
Journal:  J Bacteriol       Date:  1973-03       Impact factor: 3.490

Review 4.  Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli.

Authors:  E M Witkin
Journal:  Bacteriol Rev       Date:  1976-12

5.  Mutagenic repair in Escherichia coli: products of the recA gene and of the umuD and umuC genes act at different steps in UV-induced mutagenesis.

Authors:  B A Bridges; R Woodgate
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

6.  Analysis of DNA polymerases II and 3 in mutants of Escherichia coli thermosensitive for DNA synthesis.

Authors:  M L Gefter; Y Hirota; T Kornberg; J A Wechsler; C Barnoux
Journal:  Proc Natl Acad Sci U S A       Date:  1971-12       Impact factor: 11.205

7.  Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Poleta.

Authors:  R E Johnson; S Prakash; L Prakash
Journal:  Science       Date:  1999-02-12       Impact factor: 47.728

8.  UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA.

Authors:  S E Burckhardt; R Woodgate; R H Scheuermann; H Echols
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

9.  Uvm mutants of Escherichia coli K12 deficient in UV mutagenesis. I. Isolation of uvm mutants and their phenotypical characterization in DNA repair and mutagenesis.

Authors:  G Steinborn
Journal:  Mol Gen Genet       Date:  1978-09-20

10.  RecA protein-dependent cleavage of UmuD protein and SOS mutagenesis.

Authors:  H Shinagawa; H Iwasaki; T Kato; A Nakata
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

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  202 in total

1.  umuDC-mediated cold sensitivity is a manifestation of functions of the UmuD(2)C complex involved in a DNA damage checkpoint control.

Authors:  M D Sutton; G C Walker
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity.

Authors:  J Wagner; S Fujii; P Gruz; T Nohmi; R P Fuchs
Journal:  EMBO Rep       Date:  2000-12       Impact factor: 8.807

3.  Intrinsic polymerase activities of UmuD'(2)C and MucA'(2)B are responsible for their different mutagenic properties during bypass of a T-T cis-syn cyclobutane dimer.

Authors:  P I O'Grady; A Borden; D Vandewiele; A Ozgenc; R Woodgate; C W Lawrence
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

4.  The SOS response regulates adaptive mutation.

Authors:  G J McKenzie; R S Harris; P L Lee; S M Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

5.  The many faces of DNA polymerases: strategies for mutagenesis and for mutational avoidance.

Authors:  E C Friedberg; W J Feaver; V L Gerlach
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

6.  Highly mutagenic replication by DNA polymerase V (UmuC) provides a mechanistic basis for SOS untargeted mutagenesis.

Authors:  A Maor-Shoshani; N B Reuven; G Tomer; Z Livneh
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

7.  Bridging the gap: a family of novel DNA polymerases that replicate faulty DNA.

Authors:  R E Johnson; M T Washington; S Prakash; L Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

8.  Physical interactions between DinI and RecA nucleoprotein filament for the regulation of SOS mutagenesis.

Authors:  T Yasuda; K Morimatsu; R Kato; J Usukura; M Takahashi; H Ohmori
Journal:  EMBO J       Date:  2001-03-01       Impact factor: 11.598

Review 9.  A new class of errant DNA polymerases provides candidates for somatic hypermutation.

Authors:  B Tippin; M F Goodman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-01-29       Impact factor: 6.237

Review 10.  Hypermutation in bacteria and other cellular systems.

Authors:  B A Bridges
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-01-29       Impact factor: 6.237

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