Literature DB >> 24248363

Distribution of directional change as a signature of complex dynamics.

Stanislav Burov1, S M Ali Tabei, Toan Huynh, Michael P Murrell, Louis H Philipson, Stuart A Rice, Margaret L Gardel, Norbert F Scherer, Aaron R Dinner.   

Abstract

Analyses of random walks traditionally use the mean square displacement (MSD) as an order parameter characterizing dynamics. We show that the distribution of relative angles of motion between successive time intervals of random walks in two or more dimensions provides information about stochastic processes beyond the MSD. We illustrate the behavior of this measure for common models and apply it to experimental particle tracking data. For a colloidal system, the distribution of relative angles reports sensitively on caging as the density varies. For transport mediated by molecular motors on filament networks in vitro and in vivo, we discover self-similar properties that cannot be described by existing models and discuss possible scenarios that can lead to the elucidated statistical features.

Entities:  

Keywords:  angular correlation; cytoskeleton; random walks

Mesh:

Substances:

Year:  2013        PMID: 24248363      PMCID: PMC3856831          DOI: 10.1073/pnas.1319473110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Three-dimensional direct imaging of structural relaxation near the colloidal glass transition

Authors: 
Journal:  Science       Date:  2000-01-28       Impact factor: 47.728

2.  Quantitative analysis of single particle trajectories: mean maximal excursion method.

Authors:  Vincent Tejedor; Olivier Bénichou; Raphael Voituriez; Ralf Jungmann; Friedrich Simmel; Christine Selhuber-Unkel; Lene B Oddershede; Ralf Metzler
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Subdiffusion of mixed origins: when ergodicity and nonergodicity coexist.

Authors:  Yasmine Meroz; Igor M Sokolov; Joseph Klafter
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-01-04

4.  Ergodic properties of fractional Brownian-Langevin motion.

Authors:  Weihua Deng; Eli Barkai
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-01-13

5.  Limits of predictability in human mobility.

Authors:  Chaoming Song; Zehui Qu; Nicholas Blumm; Albert-László Barabási
Journal:  Science       Date:  2010-02-19       Impact factor: 47.728

6.  Random time-scale invariant diffusion and transport coefficients.

Authors:  Y He; S Burov; R Metzler; E Barkai
Journal:  Phys Rev Lett       Date:  2008-07-28       Impact factor: 9.161

7.  Anomalous yet Brownian.

Authors:  Bo Wang; Stephen M Anthony; Sung Chul Bae; Steve Granick
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-30       Impact factor: 11.205

8.  Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking.

Authors:  Aubrey V Weigel; Blair Simon; Michael M Tamkun; Diego Krapf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

9.  In vitro processing and secretion of mutant insulin proteins that cause permanent neonatal diabetes.

Authors:  Sindhu Rajan; Stefani C Eames; Soo-Young Park; Christine Labno; Graeme I Bell; Victoria E Prince; Louis H Philipson
Journal:  Am J Physiol Endocrinol Metab       Date:  2009-12-01       Impact factor: 4.310

10.  Requirements for contractility in disordered cytoskeletal bundles.

Authors:  Martin Lenz; Margaret L Gardel; Aaron R Dinner
Journal:  New J Phys       Date:  2012-03-28       Impact factor: 3.729

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  25 in total

1.  Characterization of anomalous movements of spherical living cells on a silicon dioxide glassy substrate.

Authors:  Myeonggu Son; Gyudo Lee; Jongsang Son; Seungyeop Choi; Youngho Kim; Sei-Young Lee; Young-Ro Yoon; Dae Sung Yoon; Sang Woo Lee
Journal:  Biomicrofluidics       Date:  2015-01-07       Impact factor: 2.800

2.  Single-pixel interior filling function approach for detecting and correcting errors in particle tracking.

Authors:  Stanislav Burov; Patrick Figliozzi; Binhua Lin; Stuart A Rice; Norbert F Scherer; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

3.  Fundamental trade-offs between information flow in single cells and cellular populations.

Authors:  Ryan Suderman; John A Bachman; Adam Smith; Peter K Sorger; Eric J Deeds
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

4.  Force Spectrum Microscopy Using Mitochondrial Fluctuations of Control and ATP-Depleted Cells.

Authors:  Wenlong Xu; Elaheh Alizadeh; Ashok Prasad
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

Review 5.  Diatrack particle tracking software: Review of applications and performance evaluation.

Authors:  Pascal Vallotton; Antoine M van Oijen; Cynthia B Whitchurch; Vladimir Gelfand; Leslie Yeo; Georgios Tsiavaliaris; Stephanie Heinrich; Elisa Dultz; Karsten Weis; David Grünwald
Journal:  Traffic       Date:  2017-10-23       Impact factor: 6.215

6.  Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.

Authors:  Ignacio Izeddin; Vincent Récamier; Lana Bosanac; Ibrahim I Cissé; Lydia Boudarene; Claire Dugast-Darzacq; Florence Proux; Olivier Bénichou; Raphaël Voituriez; Olivier Bensaude; Maxime Dahan; Xavier Darzacq
Journal:  Elife       Date:  2014-06-12       Impact factor: 8.140

7.  Increased Confinement and Polydispersity of STIM1 and Orai1 after Ca2+ Store Depletion.

Authors:  Xianan Qin; Lei Liu; Sang Kwon Lee; Adolfo Alsina; Teng Liu; Chao Wu; Hojeong Park; Chenglong Yu; Hajin Kim; Jun Chu; Antoine Triller; Ben Zhong Tang; Changbong Hyeon; Chan Young Park; Hyokeun Park
Journal:  Biophys J       Date:  2019-11-22       Impact factor: 4.033

8.  Microtubules Enhance Mesoscale Effective Diffusivity in the Crowded Metaphase Cytoplasm.

Authors:  Lina Carlini; Gregory P Brittingham; Liam J Holt; Tarun M Kapoor
Journal:  Dev Cell       Date:  2020-08-19       Impact factor: 12.270

9.  Dynamic motions of molecular motors in the actin cytoskeleton.

Authors:  Wonyeong Jung; A Pasha Tabatabai; Jacob J Thomas; S M Ali Tabei; Michael P Murrell; Taeyoon Kim
Journal:  Cytoskeleton (Hoboken)       Date:  2019-12-09

10.  Nonequilibrium phase diagrams for actomyosin networks.

Authors:  Simon L Freedman; Glen M Hocky; Shiladitya Banerjee; Aaron R Dinner
Journal:  Soft Matter       Date:  2018-09-26       Impact factor: 3.679

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