Literature DB >> 30204203

Nonequilibrium phase diagrams for actomyosin networks.

Simon L Freedman1, Glen M Hocky, Shiladitya Banerjee, Aaron R Dinner.   

Abstract

Living cells dynamically modulate the local morphologies of their actin networks to perform biological functions, including force transduction, intracellular transport, and cell division. A major challenge is to understand how diverse structures of the actin cytoskeleton are assembled from a limited set of molecular building blocks. Here we study the spontaneous self-assembly of a minimal model of cytoskeletal materials, consisting of semiflexible actin filaments, crosslinkers, and molecular motors. Using coarse-grained simulations, we demonstrate that by changing concentrations and kinetics of crosslinkers and motors, as well as filament lengths, we can generate three distinct structural phases of actomyosin assemblies: bundled, polarity-sorted, and contracted. We introduce new metrics to distinguish these structural phases and demonstrate their functional roles. We find that the binding kinetics of motors and crosslinkers can be tuned to optimize contractile force generation, motor transport, and mechanical response. By quantitatively characterizing the relationships between the modes of cytoskeletal self-assembly, the resulting structures, and their functional consequences, our work suggests new principles for the design of active materials.

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Year:  2018        PMID: 30204203      PMCID: PMC6192427          DOI: 10.1039/c8sm00741a

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  54 in total

1.  Robust pore size analysis of filamentous networks from three-dimensional confocal microscopy.

Authors:  Walter Mickel; Stefan Münster; Louise M Jawerth; David A Vader; David A Weitz; Adrian P Sheppard; Klaus Mecke; Ben Fabry; Gerd E Schröder-Turk
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

2.  Active multistage coarsening of actin networks driven by myosin motors.

Authors:  Marina Soares e Silva; Martin Depken; Björn Stuhrmann; Marijn Korsten; Fred C MacKintosh; Gijsje H Koenderink
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

3.  A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks.

Authors:  Simon L Freedman; Shiladitya Banerjee; Glen M Hocky; Aaron R Dinner
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

4.  Contractility in an extensile system.

Authors:  Kasimira T Stanhope; Vikrant Yadav; Christian D Santangelo; Jennifer L Ross
Journal:  Soft Matter       Date:  2017-06-14       Impact factor: 3.679

Review 5.  Actin cortex mechanics and cellular morphogenesis.

Authors:  Guillaume Salbreux; Guillaume Charras; Ewa Paluch
Journal:  Trends Cell Biol       Date:  2012-08-04       Impact factor: 20.808

Review 6.  Forcing cells into shape: the mechanics of actomyosin contractility.

Authors:  Michael Murrell; Patrick W Oakes; Martin Lenz; Margaret L Gardel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-07-01       Impact factor: 94.444

7.  Requirements for contractility in disordered cytoskeletal bundles.

Authors:  Martin Lenz; Margaret L Gardel; Aaron R Dinner
Journal:  New J Phys       Date:  2012-03-28       Impact factor: 3.729

8.  The dynamics of filament assembly define cytoskeletal network morphology.

Authors:  Giulia Foffano; Nicolas Levernier; Martin Lenz
Journal:  Nat Commun       Date:  2016-12-21       Impact factor: 14.919

9.  Filament turnover tunes both force generation and dissipation to control long-range flows in a model actomyosin cortex.

Authors:  William M McFadden; Patrick M McCall; Margaret L Gardel; Edwin M Munro
Journal:  PLoS Comput Biol       Date:  2017-12-18       Impact factor: 4.475

10.  Computational analysis of viscoelastic properties of crosslinked actin networks.

Authors:  Taeyoon Kim; Wonmuk Hwang; Hyungsuk Lee; Roger D Kamm
Journal:  PLoS Comput Biol       Date:  2009-07-17       Impact factor: 4.475

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  10 in total

1.  Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles.

Authors:  Simon L Freedman; Cristian Suarez; Jonathan D Winkelman; David R Kovar; Gregory A Voth; Aaron R Dinner; Glen M Hocky
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-25       Impact factor: 11.205

2.  Mobility of Molecular Motors Regulates Contractile Behaviors of Actin Networks.

Authors:  Atsushi Matsuda; Jing Li; Peter Brumm; Taiji Adachi; Yasuhiro Inoue; Taeyoon Kim
Journal:  Biophys J       Date:  2019-04-22       Impact factor: 4.033

3.  The Actin Cytoskeleton as an Active Adaptive Material.

Authors:  Shiladitya Banerjee; Margaret L Gardel; Ulrich S Schwarz
Journal:  Annu Rev Condens Matter Phys       Date:  2019-12-06       Impact factor: 16.109

4.  Detailed Balance Broken by Catch Bond Kinetics Enables Mechanical-Adaptation in Active Materials.

Authors:  Alan Pasha Tabatabai; Daniel S Seara; Joseph Tibbs; Vikrant Yadav; Ian Linsmeier; Michael P Murrell
Journal:  Adv Funct Mater       Date:  2020-12-16       Impact factor: 18.808

5.  Protein friction and filament bending facilitate contraction of disordered actomyosin networks.

Authors:  Alexander K Y Tam; Alex Mogilner; Dietmar B Oelz
Journal:  Biophys J       Date:  2021-08-12       Impact factor: 3.699

6.  Dynamic motions of molecular motors in the actin cytoskeleton.

Authors:  Wonyeong Jung; A Pasha Tabatabai; Jacob J Thomas; S M Ali Tabei; Michael P Murrell; Taeyoon Kim
Journal:  Cytoskeleton (Hoboken)       Date:  2019-12-09

7.  Quantifying dissipation in actomyosin networks.

Authors:  Carlos Floyd; Garegin A Papoian; Christopher Jarzynski
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

8.  Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling.

Authors:  Aravind Chandrasekaran; Arpita Upadhyaya; Garegin A Papoian
Journal:  PLoS Comput Biol       Date:  2019-07-09       Impact factor: 4.475

9.  Stratification relieves constraints from steric hindrance in the generation of compact actomyosin asters at the membrane cortex.

Authors:  Amit Das; Abrar Bhat; Rastko Sknepnek; Darius Köster; Satyajit Mayor; Madan Rao
Journal:  Sci Adv       Date:  2020-03-11       Impact factor: 14.136

10.  Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture.

Authors:  Yashar Bashirzadeh; Steven A Redford; Chatipat Lorpaiboon; Alessandro Groaz; Hossein Moghimianavval; Thomas Litschel; Petra Schwille; Glen M Hocky; Aaron R Dinner; Allen P Liu
Journal:  Commun Biol       Date:  2021-09-28
  10 in total

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