Literature DB >> 28500273

Fundamental trade-offs between information flow in single cells and cellular populations.

Ryan Suderman1, John A Bachman2, Adam Smith1, Peter K Sorger2, Eric J Deeds3,4,5.   

Abstract

Signal transduction networks allow eukaryotic cells to make decisions based on information about intracellular state and the environment. Biochemical noise significantly diminishes the fidelity of signaling: networks examined to date seem to transmit less than 1 bit of information. It is unclear how networks that control critical cell-fate decisions (e.g., cell division and apoptosis) can function with such low levels of information transfer. Here, we use theory, experiments, and numerical analysis to demonstrate an inherent trade-off between the information transferred in individual cells and the information available to control population-level responses. Noise in receptor-mediated apoptosis reduces information transfer to approximately 1 bit at the single-cell level but allows 3-4 bits of information to be transmitted at the population level. For processes such as eukaryotic chemotaxis, in which single cells are the functional unit, we find high levels of information transmission at a single-cell level. Thus, low levels of information transfer are unlikely to represent a physical limit. Instead, we propose that signaling networks exploit noise at the single-cell level to increase population-level information transfer, allowing extracellular ligands, whose levels are also subject to noise, to incrementally regulate phenotypic changes. This is particularly critical for discrete changes in fate (e.g., life vs. death) for which the key variable is the fraction of cells engaged. Our findings provide a framework for rationalizing the high levels of noise in metazoan signaling networks and have implications for the development of drugs that target these networks in the treatment of cancer and other diseases.

Entities:  

Keywords:  apoptosis; cellular heterogeneity; information theory; signal transduction

Mesh:

Substances:

Year:  2017        PMID: 28500273      PMCID: PMC5465904          DOI: 10.1073/pnas.1615660114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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3.  Quantitative analysis of pathways controlling extrinsic apoptosis in single cells.

Authors:  John G Albeck; John M Burke; Bree B Aldridge; Mingsheng Zhang; Douglas A Lauffenburger; Peter K Sorger
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4.  Distribution of directional change as a signature of complex dynamics.

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5.  CellTrack: an open-source software for cell tracking and motility analysis.

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6.  Activation of caspase-8 in drug-induced apoptosis of B-lymphoid cells is independent of CD95/Fas receptor-ligand interaction and occurs downstream of caspase-3.

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7.  Feedforward regulation ensures stability and rapid reversibility of a cellular state.

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8.  Fold change of nuclear NF-κB determines TNF-induced transcription in single cells.

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9.  Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis.

Authors:  Suzanne Gaudet; Sabrina L Spencer; William W Chen; Peter K Sorger
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  32 in total

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2.  Robustness, Accuracy, and Cell State Heterogeneity in Biological Systems.

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3.  Intrinsic limits of information transmission in biochemical signalling motifs.

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4.  NF-κB Dynamics Discriminate between TNF Doses in Single Cells.

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6.  Temporal signaling, population control, and information processing through chromatin-mediated gene regulation.

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Review 7.  Quantifying information of intracellular signaling: progress with machine learning.

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8.  Computational methods for characterizing and learning from heterogeneous cell signaling data.

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9.  Individual Cells Can Resolve Variations in Stimulus Intensity along the IGF-PI3K-AKT Signaling Axis.

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10.  Fractional response analysis reveals logarithmic cytokine responses in cellular populations.

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Journal:  Nat Commun       Date:  2021-07-07       Impact factor: 14.919

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