Literature DB >> 20365308

Subdiffusion of mixed origins: when ergodicity and nonergodicity coexist.

Yasmine Meroz1, Igor M Sokolov, Joseph Klafter.   

Abstract

Single particle trajectories are investigated assuming the coexistence of two subdiffusive processes: diffusion on a fractal structure modeling spatial constraints on motion and heavy-tailed continuous time random walks representing energetic or chemical traps. The particles' mean squared displacement is found to depend on the way the mean is taken: temporal averaging over single-particle trajectories differs from averaging over an ensemble of particles. This is shown to stem from subordinating an ergodic anomalous process to a nonergodic one. The result is easily generalized to the subordination of any other ergodic process (i.e., fractional Brownian motion) to a nonergodic one. For certain parameters the ergodic diffusion on the underlying fractal structure dominates the transport yet displaying ergodicity breaking and aging.

Entities:  

Year:  2010        PMID: 20365308     DOI: 10.1103/PhysRevE.81.010101

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  13 in total

1.  Distribution of directional change as a signature of complex dynamics.

Authors:  Stanislav Burov; S M Ali Tabei; Toan Huynh; Michael P Murrell; Louis H Philipson; Stuart A Rice; Margaret L Gardel; Norbert F Scherer; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

2.  Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking.

Authors:  Aubrey V Weigel; Blair Simon; Michael M Tamkun; Diego Krapf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

3.  Subdiffusive Dynamics Lead to Depleted Particle Densities near Cellular Borders.

Authors:  William R Holmes
Journal:  Biophys J       Date:  2019-02-28       Impact factor: 4.033

4.  Membrane Diffusion Occurs by Continuous-Time Random Walk Sustained by Vesicular Trafficking.

Authors:  Maria Goiko; John R de Bruyn; Bryan Heit
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

5.  Intracellular transport of insulin granules is a subordinated random walk.

Authors:  S M Ali Tabei; Stanislav Burov; Hee Y Kim; Andrey Kuznetsov; Toan Huynh; Justin Jureller; Louis H Philipson; Aaron R Dinner; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

6.  Segmentation of 3D Trajectories Acquired by TSUNAMI Microscope: An Application to EGFR Trafficking.

Authors:  Yen-Liang Liu; Evan P Perillo; Cong Liu; Peter Yu; Chao-Kai Chou; Mien-Chie Hung; Andrew K Dunn; Hsin-Chih Yeh
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

Review 7.  Rad4 recognition-at-a-distance: Physical basis of conformation-specific anomalous diffusion of DNA repair proteins.

Authors:  Muwen Kong; Bennett Van Houten
Journal:  Prog Biophys Mol Biol       Date:  2016-12-08       Impact factor: 3.667

8.  Meaningful interpretation of subdiffusive measurements in living cells (crowded environment) by fluorescence fluctuation microscopy.

Authors:  Gerd Baumann; Robert F Place; Zeno Földes-Papp
Journal:  Curr Pharm Biotechnol       Date:  2010-08       Impact factor: 2.837

9.  Fluorescence molecule counting for single-molecule studies in crowded environment of living cells without and with broken ergodicity.

Authors:  Zeno Földes-Papp; Gerd Baumann
Journal:  Curr Pharm Biotechnol       Date:  2011-05       Impact factor: 2.837

10.  Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time.

Authors:  Yan Yan; Wenxuan Xu; Sandip Kumar; Alexander Zhang; Fenfei Leng; David Dunlap; Laura Finzi
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

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