Literature DB >> 24211822

Practical workflow for cryo focused-ion-beam milling of tissues and cells for cryo-TEM tomography.

Chyongere Hsieh1, Thomas Schmelzer2, Gregory Kishchenko1, Terence Wagenknecht3, Michael Marko4.   

Abstract

Vitreous freezing offers a way to study cells and tissue in a near-native state by cryo-transmission electron microscopy (cryo-TEM), which is important when structural information at the macromolecular level is required. Many cells - especially those in tissue - are too thick to study intact in the cryo-TEM. Cryo focused-ion-beam (cryo-FIB) milling is being used in a few laboratories to thin vitreously frozen specimens, thus avoiding the artifacts and difficulties of cryo-ultramicrotomy. However, the technique is challenging because of the need to avoid devitrification and frost accumulation during the entire process, from the initial step of freezing to the final step of loading the specimen into the cryo-TEM. We present a robust workflow that makes use of custom fixtures and devices that can be used for high-pressure-frozen bulk tissue samples as well as for samples frozen on TEM grids.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cryo-FIB; Cryo-SEM; Cryo-TEM; Cryo-tomography; Vitreous sections

Mesh:

Substances:

Year:  2013        PMID: 24211822      PMCID: PMC3890102          DOI: 10.1016/j.jsb.2013.10.019

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  30 in total

1.  Electron tomography of frozen-hydrated isolated triad junctions.

Authors:  T Wagenknecht; C-E Hsieh; B K Rath; S Fleischer; M Marko
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

2.  Cryo-electron microscopy of vitreous sections of native biological cells and tissues.

Authors:  Ashraf Al-Amoudi; Lars P O Norlen; Jacques Dubochet
Journal:  J Struct Biol       Date:  2004-10       Impact factor: 2.867

3.  Focused ion beam milling of vitreous water: prospects for an alternative to cryo-ultramicrotomy of frozen-hydrated biological samples.

Authors:  M Marko; C Hsieh; W Moberlychan; C A Mannella; J Frank
Journal:  J Microsc       Date:  2006-04       Impact factor: 1.758

4.  Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy.

Authors:  Michael Marko; Chyongere Hsieh; Richard Schalek; Joachim Frank; Carmen Mannella
Journal:  Nat Methods       Date:  2007-02-04       Impact factor: 28.547

5.  Classification of cryo-electron sub-tomograms using constrained correlation.

Authors:  Friedrich Förster; Sabine Pruggnaller; Anja Seybert; Achilleas S Frangakis
Journal:  J Struct Biol       Date:  2007-07-26       Impact factor: 2.867

6.  Classification of electron sub-tomograms with neural networks and its application to template-matching.

Authors:  Zhou Yu; Achilleas S Frangakis
Journal:  J Struct Biol       Date:  2011-03-05       Impact factor: 2.867

7.  High pressure freezing comes of age.

Authors:  D Studer; M Michel; M Müller
Journal:  Scanning Microsc Suppl       Date:  1989

8.  Thinning of large mammalian cells for cryo-TEM characterization by cryo-FIB milling.

Authors:  K M Strunk; K Wang; D Ke; J L Gray; P Zhang
Journal:  J Microsc       Date:  2012-09       Impact factor: 1.758

9.  Structure of frozen-hydrated triad junctions: a case study in motif searching inside tomograms.

Authors:  Christian Renken; Chyong-ere Hsieh; Michael Marko; Bimal Rath; Ardean Leith; Terry Wagenknecht; Joachim Frank; Carmen A Mannella
Journal:  J Struct Biol       Date:  2008-11-05       Impact factor: 2.867

10.  3D structure determination of native mammalian cells using cryo-FIB and cryo-electron tomography.

Authors:  Ke Wang; Korrinn Strunk; Gongpu Zhao; Jennifer L Gray; Peijun Zhang
Journal:  J Struct Biol       Date:  2012-07-14       Impact factor: 2.867

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  20 in total

1.  Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy.

Authors:  Jan Arnold; Julia Mahamid; Vladan Lucic; Alex de Marco; Jose-Jesus Fernandez; Tim Laugks; Tobias Mayer; Anthony A Hyman; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

Review 2.  Focused ion beams in biology.

Authors:  Kedar Narayan; Sriram Subramaniam
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

3.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

4.  Skeletal muscle triad junction ultrastructure by Focused-Ion-Beam milling of muscle and Cryo-Electron Tomography.

Authors:  Terence Wagenknecht; Chyongere Hsieh; Michael Marko
Journal:  Eur J Transl Myol       Date:  2015

5.  Electron microscopy for imaging organelles in plants and algae.

Authors:  Ethan Weiner; Justine M Pinskey; Daniela Nicastro; Marisa S Otegui
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.005

6.  Cryo-FIB specimen preparation for use in a cartridge-type cryo-TEM.

Authors:  Jie He; Chyongere Hsieh; Yongping Wu; Thomas Schmelzer; Pan Wang; Ying Lin; Michael Marko; Haixin Sui
Journal:  J Struct Biol       Date:  2017-05-27       Impact factor: 2.867

7.  Cryo-fluorescence microscopy of high-pressure frozen C. elegans enables correlative FIB-SEM imaging of targeted embryonic stages in the intact worm.

Authors:  Irene Y Chang; Mohammad Rahman; Adam Harned; Orna Cohen-Fix; Kedar Narayan
Journal:  Methods Cell Biol       Date:  2020-11-04       Impact factor: 1.829

Review 8.  Viral Infection at High Magnification: 3D Electron Microscopy Methods to Analyze the Architecture of Infected Cells.

Authors:  Inés Romero-Brey; Ralf Bartenschlager
Journal:  Viruses       Date:  2015-12-03       Impact factor: 5.048

Review 9.  A cool hybrid approach to the herpesvirus 'life' cycle.

Authors:  Tzviya Zeev-Ben-Mordehai; Christoph Hagen; Kay Grünewald
Journal:  Curr Opin Virol       Date:  2014-02-16       Impact factor: 7.090

10.  Multimodal nanoparticles as alignment and correlation markers in fluorescence/soft X-ray cryo-microscopy/tomography of nucleoplasmic reticulum and apoptosis in mammalian cells.

Authors:  Christoph Hagen; Stephan Werner; Susana Carregal-Romero; Ashraf N Malhas; Barbara G Klupp; Peter Guttmann; Stefan Rehbein; Katja Henzler; Thomas C Mettenleiter; David J Vaux; Wolfgang J Parak; Gerd Schneider; Kay Grünewald
Journal:  Ultramicroscopy       Date:  2014-06-03       Impact factor: 2.689

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