Literature DB >> 28559166

Cryo-FIB specimen preparation for use in a cartridge-type cryo-TEM.

Jie He1, Chyongere Hsieh1, Yongping Wu2, Thomas Schmelzer3, Pan Wang4, Ying Lin4, Michael Marko1, Haixin Sui5.   

Abstract

Cryo-electron tomography (cryo-ET) is a well-established technique for studying 3D structural details of subcellular macromolecular complexes and organelles in their nearly native context in the cell. A primary limitation of the application of cryo-ET is the accessible specimen thickness, which is less than the diameters of almost all eukaryotic cells. It has been shown that focused ion beam (FIB) milling can be used to prepare thin, distortion-free lamellae of frozen biological material for high-resolution cryo-ET. Commercial cryosystems are available for cryo-FIB specimen preparation, however re-engineering and additional fixtures are often essential for reliable results with a particular cryo-FIB and cryo-transmission electron microscope (cryo-TEM). Here, we describe our optimized protocol and modified instrumentation for cryo-FIB milling to produce thin lamellae and subsequent damage-free cryotransfer of the lamellae into our cartridge-type cryo-TEM. Published by Elsevier Inc.

Entities:  

Keywords:  Alcohol-oxidase; Cryo-ET; Cryo-FIB; Organelles; TEM cartridges; Yeast

Mesh:

Year:  2017        PMID: 28559166      PMCID: PMC5555045          DOI: 10.1016/j.jsb.2017.05.011

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  29 in total

1.  Focused ion beam milling of vitreous water: prospects for an alternative to cryo-ultramicrotomy of frozen-hydrated biological samples.

Authors:  M Marko; C Hsieh; W Moberlychan; C A Mannella; J Frank
Journal:  J Microsc       Date:  2006-04       Impact factor: 1.758

2.  Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy.

Authors:  Michael Marko; Chyongere Hsieh; Richard Schalek; Joachim Frank; Carmen Mannella
Journal:  Nat Methods       Date:  2007-02-04       Impact factor: 28.547

3.  Electron tomography of vitreous sections from cultured mammalian cells.

Authors:  Manuela Gruska; Ohad Medalia; Wolfgang Baumeister; Andrew Leis
Journal:  J Struct Biol       Date:  2007-10-26       Impact factor: 2.867

4.  Dimer ribbons of ATP synthase shape the inner mitochondrial membrane.

Authors:  Mike Strauss; Götz Hofhaus; Rasmus R Schröder; Werner Kühlbrandt
Journal:  EMBO J       Date:  2008-03-06       Impact factor: 11.598

5.  Macromolecular organization of ATP synthase and complex I in whole mitochondria.

Authors:  Karen M Davies; Mike Strauss; Bertram Daum; Jan H Kief; Heinz D Osiewacz; Adriana Rycovska; Volker Zickermann; Werner Kühlbrandt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-11       Impact factor: 11.205

6.  Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins.

Authors:  Miroslava Schaffer; Julia Mahamid; Benjamin D Engel; Tim Laugks; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  J Struct Biol       Date:  2016-07-19       Impact factor: 2.867

7.  Automated tilt series alignment and tomographic reconstruction in IMOD.

Authors:  David N Mastronarde; Susannah R Held
Journal:  J Struct Biol       Date:  2016-07-19       Impact factor: 2.867

8.  3D structure determination of native mammalian cells using cryo-FIB and cryo-electron tomography.

Authors:  Ke Wang; Korrinn Strunk; Gongpu Zhao; Jennifer L Gray; Peijun Zhang
Journal:  J Struct Biol       Date:  2012-07-14       Impact factor: 2.867

Review 9.  Cryo-electron tomography: the challenge of doing structural biology in situ.

Authors:  Vladan Lučič; Alexander Rigort; Wolfgang Baumeister
Journal:  J Cell Biol       Date:  2013-08-05       Impact factor: 10.539

10.  Structure of Alcohol Oxidase from Pichia pastoris by Cryo-Electron Microscopy.

Authors:  Janet Vonck; David N Parcej; Deryck J Mills
Journal:  PLoS One       Date:  2016-07-26       Impact factor: 3.240

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  2 in total

1.  Accessing crystal-crystal interaction forces with oriented nanocrystal atomic force microscopy probes.

Authors:  Yang He; Jia Liu; Xin Zhang; Mark E Bowden; Libor Kovarik; Scott X Mao; Chongmin Wang; James J De Yoreo; Kevin M Rosso
Journal:  Nat Protoc       Date:  2018-09       Impact factor: 13.491

2.  An introduction to cryo-FIB-SEM cross-sectioning of frozen, hydrated Life Science samples.

Authors:  M F Hayles; D A M DE Winter
Journal:  J Microsc       Date:  2020-08-24       Impact factor: 1.758

  2 in total

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