Literature DB >> 22796867

3D structure determination of native mammalian cells using cryo-FIB and cryo-electron tomography.

Ke Wang1, Korrinn Strunk, Gongpu Zhao, Jennifer L Gray, Peijun Zhang.   

Abstract

Cryo-electron tomography (cryo-ET) has enabled high resolution three-dimensional(3D) structural analysis of virus and host cell interactions and many cell signaling events; these studies, however, have largely been limited to very thin, peripheral regions of eukaryotic cells or to small prokaryotic cells. Recent efforts to make thin, vitreous sections using cryo-ultramicrotomy have been successful, however,this method is technically very challenging and with many artifacts. Here, we report a simple and robust method for creating in situ, frozen-hydrated cell lamellas using a focused ion beam at cryogenic temperature (cryo-FIB), allowing access to any interior cellular regions of interest. We demonstrate the utility of cryo-FIB with high resolution 3D cellular structures from both bacterial cells and large mammalian cells. The method will not only facilitate high-throughput 3D structural analysis of biological specimens, but is also broadly applicable to sample preparation of thin films and surface materials without the need for FIB "lift-out".
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22796867      PMCID: PMC3483467          DOI: 10.1016/j.jsb.2012.07.003

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  56 in total

1.  Direct visualization of receptor arrays in frozen-hydrated sections and plunge-frozen specimens of E. coli engineered to overproduce the chemotaxis receptor Tsr.

Authors:  P Zhang; E Bos; J Heymann; H Gnaegi; M Kessel; P J Peters; S Subramaniam
Journal:  J Microsc       Date:  2004-10       Impact factor: 1.758

2.  Electron tomography of vitreous sections from cultured mammalian cells.

Authors:  Manuela Gruska; Ohad Medalia; Wolfgang Baumeister; Andrew Leis
Journal:  J Struct Biol       Date:  2007-10-26       Impact factor: 2.867

3.  The molecular architecture of cadherins in native epidermal desmosomes.

Authors:  Ashraf Al-Amoudi; Daniel Castaño Díez; Matthew J Betts; Achilleas S Frangakis
Journal:  Nature       Date:  2007-12-06       Impact factor: 49.962

4.  Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography.

Authors:  Anna Sartori; Rudolf Gatz; Florian Beck; Alexander Rigort; Wolfgang Baumeister; Juergen M Plitzko
Journal:  J Struct Biol       Date:  2007-08-16       Impact factor: 2.867

5.  Concatenated metallothionein as a clonable gold label for electron microscopy.

Authors:  Christopher P Mercogliano; David J DeRosier
Journal:  J Struct Biol       Date:  2007-07-10       Impact factor: 2.867

6.  Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching.

Authors:  Cindi L Schwartz; Vasily I Sarbash; Fazoil I Ataullakhanov; J Richard McIntosh; Daniela Nicastro
Journal:  J Microsc       Date:  2007-08       Impact factor: 1.758

7.  Cryo electron tomography of vitrified fibroblasts: microtubule plus ends in situ.

Authors:  Roman I Koning; Sandra Zovko; Montserrat Bárcena; Gert T Oostergetel; Henk K Koerten; Niels Galjart; Abraham J Koster; A Mieke Mommaas
Journal:  J Struct Biol       Date:  2007-08-29       Impact factor: 2.867

8.  Molecular architecture of native HIV-1 gp120 trimers.

Authors:  Jun Liu; Alberto Bartesaghi; Mario J Borgnia; Guillermo Sapiro; Sriram Subramaniam
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

9.  Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy.

Authors:  Peijun Zhang; Cezar M Khursigara; Lisa M Hartnell; Sriram Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-26       Impact factor: 11.205

10.  Native 3D intermediates of membrane fusion in herpes simplex virus 1 entry.

Authors:  Ulrike E Maurer; Beate Sodeik; Kay Grünewald
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-24       Impact factor: 11.205

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  27 in total

1.  Correlative microscopy for 3D structural analysis of dynamic interactions.

Authors:  Sangmi Jun; Gongpu Zhao; Jiying Ning; Gregory A Gibson; Simon C Watkins; Peijun Zhang
Journal:  J Vis Exp       Date:  2013-06-24       Impact factor: 1.355

Review 2.  Advances in Cryo-Correlative Light and Electron Microscopy: Applications for Studying Molecular and Cellular Events.

Authors:  Sangmi Jun; Hyun-Joo Ro; Anahita Bharda; Seung Il Kim; Dooil Jeoung; Hyun Suk Jung
Journal:  Protein J       Date:  2019-12       Impact factor: 2.371

Review 3.  Focused ion beams in biology.

Authors:  Kedar Narayan; Sriram Subramaniam
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

Review 4.  Atomic cryo-EM structures of viruses.

Authors:  Wen Jiang; Liang Tang
Journal:  Curr Opin Struct Biol       Date:  2017-08-05       Impact factor: 6.809

5.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

6.  Controlled bacterial lysis for electron tomography of native cell membranes.

Authors:  Xiaofeng Fu; Benjamin A Himes; Danxia Ke; William J Rice; Jiying Ning; Peijun Zhang
Journal:  Structure       Date:  2014-11-20       Impact factor: 5.006

7.  Skeletal muscle triad junction ultrastructure by Focused-Ion-Beam milling of muscle and Cryo-Electron Tomography.

Authors:  Terence Wagenknecht; Chyongere Hsieh; Michael Marko
Journal:  Eur J Transl Myol       Date:  2015

8.  Practical workflow for cryo focused-ion-beam milling of tissues and cells for cryo-TEM tomography.

Authors:  Chyongere Hsieh; Thomas Schmelzer; Gregory Kishchenko; Terence Wagenknecht; Michael Marko
Journal:  J Struct Biol       Date:  2013-11-06       Impact factor: 2.867

9.  Neutralizing Antibodies Inhibit Chikungunya Virus Budding at the Plasma Membrane.

Authors:  Jing Jin; Jesús G Galaz-Montoya; Michael B Sherman; Stella Y Sun; Cynthia S Goldsmith; Eileen T O'Toole; Larry Ackerman; Lars-Anders Carlson; Scott C Weaver; Wah Chiu; Graham Simmons
Journal:  Cell Host Microbe       Date:  2018-08-23       Impact factor: 21.023

Review 10.  Correlative cryo-electron tomography and optical microscopy of cells.

Authors:  Peijun Zhang
Journal:  Curr Opin Struct Biol       Date:  2013-08-17       Impact factor: 6.809

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