Literature DB >> 24157546

Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples.

Nabanita Das1, Dylan T Murray, Timothy A Cross.   

Abstract

Solid-state NMR spectroscopy has been used successfully for characterizing the structure and dynamics of membrane proteins as well as their interactions with other proteins in lipid bilayers. Such an environment is often necessary for achieving native-like structures. Sample preparation is the key to this success. Here we present a detailed description of a robust protocol that results in high-quality membrane protein samples for both magic-angle spinning and oriented-sample solid-state NMR. The procedure is demonstrated using two proteins: CrgA (two transmembrane helices) and Rv1861 (three transmembrane helices), both from Mycobacterium tuberculosis. The success of this procedure relies on two points. First, for samples for both types of NMR experiment, the reconstitution of the protein from a detergent environment to an environment in which it is incorporated into liposomes results in 'complete' removal of detergent. Second, for the oriented samples, proper dehydration followed by rehydration of the proteoliposomes is essential. By using this protocol, proteoliposome samples for magic-angle spinning NMR and uniformly aligned samples (orientational mosaicity of <1°) for oriented-sample NMR can be obtained within 10 d.

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Year:  2013        PMID: 24157546      PMCID: PMC4107459          DOI: 10.1038/nprot.2013.129

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  69 in total

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5.  Structural topology of phospholamban pentamer in lipid bilayers by a hybrid solution and solid-state NMR method.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-16       Impact factor: 11.205

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Review 8.  Comprehensive evaluation of solution nuclear magnetic resonance spectroscopy sample preparation for helical integral membrane proteins.

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9.  Characterization of CrgA, a new partner of the Mycobacterium tuberculosis peptidoglycan polymerization complexes.

Authors:  P Plocinski; M Ziolkiewicz; M Kiran; S I Vadrevu; H B Nguyen; J Hugonnet; C Veckerle; M Arthur; J Dziadek; T A Cross; M Madiraju; M Rajagopalan
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  32 in total

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Authors:  Mayu S Terakawa; Yuxi Lin; Misaki Kinoshita; Shingo Kanemura; Dai Itoh; Toshihiko Sugiki; Masaki Okumura; Ayyalusamy Ramamoorthy; Young-Ho Lee
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2.  An efficient method and device for transfer of semisolid materials into solid-state NMR spectroscopy rotors.

Authors:  Grant S Hisao; Michael A Harland; Robert A Brown; Deborah A Berthold; Thomas E Wilson; Chad M Rienstra
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3.  Influence of the lipid membrane environment on structure and activity of the outer membrane protein Ail from Yersinia pestis.

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Journal:  Biochim Biophys Acta       Date:  2014-11-27

4.  Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.

Authors:  Nabanita Das; Jian Dai; Ivan Hung; Malini R Rajagopalan; Malini R Rajagopalan; Huan-Xiang Zhou; Timothy A Cross
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Review 5.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

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Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

6.  Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-08-28       Impact factor: 2.835

7.  Spontaneous Lipid Nanodisc Fomation by Amphiphilic Polymethacrylate Copolymers.

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8.  Assignment of oriented sample NMR resonances from a three transmembrane helix protein.

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9.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

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10.  Membrane protein structural validation by oriented sample solid-state NMR: diacylglycerol kinase.

Authors:  Dylan T Murray; Conggang Li; F Philip Gao; Huajun Qin; Timothy A Cross
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

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