Literature DB >> 16413215

Intensity and mosaic spread analysis from PISEMA tensors in solid-state NMR.

J R Quine1, S Achuthan, T Asbury, R Bertram, M S Chapman, J Hu, T A Cross.   

Abstract

The solid-state NMR experiment PISEMA, is a technique for determining structures of proteins, especially membrane proteins, from oriented samples. One method for determining the structure is to find orientations of local molecular frames (peptide planes) with respect to the unit magnetic field direction, B0. This is done using equations that compute the coordinates of this vector in the frames. This requires an analysis of the PISEMA function and its degeneracies. As a measure of the sensitivity of peptide plane orientations to the data, we use these equations to derive a formula for the intensity function in the powder pattern. With this function and other measures, we investigate the effect of small changes in peptide plane orientations depending on the location of the resonances in the powder pattern spectrum. This gives us an indication of the change in lineshape due to mosaic spread and a way to interpret these in terms of an orientational error bar.

Mesh:

Substances:

Year:  2006        PMID: 16413215     DOI: 10.1016/j.jmr.2005.12.002

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  14 in total

1.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

2.  Continuity conditions and torsion angles from ssNMR orientational restraints.

Authors:  S Achuthan; T Asbury; J Hu; R Bertram; T A Cross; J R Quine
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

3.  Tilt and azimuthal angles of a transmembrane peptide: a comparison between molecular dynamics calculations and solid-state NMR data of sarcolipin in lipid membranes.

Authors:  Lei Shi; Alessandro Cembran; Jiali Gao; Gianluigi Veglia
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

4.  Transmembrane helix uniformity examined by spectral mapping of torsion angles.

Authors:  Richard C Page; Sanguk Kim; Timothy A Cross
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

5.  Assignment of oriented sample NMR resonances from a three transmembrane helix protein.

Authors:  D T Murray; I Hung; T A Cross
Journal:  J Magn Reson       Date:  2014-01-21       Impact factor: 2.229

6.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

Authors:  Alfonso De Simone; Kaustubh R Mote; Gianluigi Veglia
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

7.  Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Authors:  Alysha Dicke; T Gopinath; Yingjie Wang; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

8.  Lipid bilayer preparations of membrane proteins for oriented and magic-angle spinning solid-state NMR samples.

Authors:  Nabanita Das; Dylan T Murray; Timothy A Cross
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

9.  On the performance of spin diffusion NMR techniques in oriented solids: prospects for resonance assignments and distance measurements from separated local field experiments.

Authors:  Nathaniel J Traaseth; T Gopinath; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

10.  Assessing Interactions Between a Polytopic Membrane Protein and Lipid Bilayers Using Differential Scanning Calorimetry and Solid-State NMR.

Authors:  James R Banigan; Maureen Leninger; Ampon Sae Her; Nathaniel J Traaseth
Journal:  J Phys Chem B       Date:  2018-02-19       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.