Literature DB >> 17369821

Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans.

Sebastian Bergmann1, Julia Schümann, Kirstin Scherlach, Corinna Lange, Axel A Brakhage, Christian Hertweck.   

Abstract

In the postgenomic era it has become increasingly apparent that the vast number of predicted biosynthesis genes of microorganisms is not reflected by the metabolic profile observed under standard fermentation conditions. In the absence of a particular (in most cases unknown) trigger these gene loci remain silent. Because these cryptic gene clusters may code for the biosynthesis of important virulence factors, toxins, or even drug candidates, new strategies for their activation are urgently needed to make use of this largely untapped reservoir of potentially bioactive compounds. The discovery of new microbial metabolites through genome mining has proven to be a very promising approach. Even so, the investigation of silent gene clusters is still a substantial challenge, particularly in fungi. Here we report a new strategy for the successful induction of a silent metabolic pathway in the important model organism Aspergillus nidulans, which led to the discovery of novel PKS-NRPS hybrid metabolites.

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Year:  2007        PMID: 17369821     DOI: 10.1038/nchembio869

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  180 in total

1.  Identification of the viridicatumtoxin and griseofulvin gene clusters from Penicillium aethiopicum.

Authors:  Yit-Heng Chooi; Ralph Cacho; Yi Tang
Journal:  Chem Biol       Date:  2010-05-28

2.  Do we need new antibiotics? The search for new targets and new compounds.

Authors:  Jaroslav Spížek; Jitka Novotná; Tomáš Rezanka; Arnold L Demain
Journal:  J Ind Microbiol Biotechnol       Date:  2010-11-18       Impact factor: 3.346

3.  Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster.

Authors:  Sebastian Bergmann; Alexander N Funk; Kirstin Scherlach; Volker Schroeckh; Ekaterina Shelest; Uwe Horn; Christian Hertweck; Axel A Brakhage
Journal:  Appl Environ Microbiol       Date:  2010-10-15       Impact factor: 4.792

4.  An Aspergillus nidulans bZIP response pathway hardwired for defensive secondary metabolism operates through aflR.

Authors:  Wen-Bing Yin; Saori Amaike; Dana J Wohlbach; Audrey P Gasch; Yi-Ming Chiang; Clay C C Wang; Jin Woo Bok; Marko Rohlfs; Nancy P Keller
Journal:  Mol Microbiol       Date:  2012-02-10       Impact factor: 3.501

5.  Species diversity of culturable endophytic fungi from Brazilian mangrove forests.

Authors:  Fernanda Luiza de Souza Sebastianes; Aline Silva Romão-Dumaresq; Paulo Teixeira Lacava; Ricardo Harakava; João Lúcio Azevedo; Itamar Soares de Melo; Aline Aparecida Pizzirani-Kleiner
Journal:  Curr Genet       Date:  2013-07-06       Impact factor: 3.886

Review 6.  Genome Mining as New Challenge in Natural Products Discovery.

Authors:  Luisa Albarano; Roberta Esposito; Nadia Ruocco; Maria Costantini
Journal:  Mar Drugs       Date:  2020-04-09       Impact factor: 5.118

7.  The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Authors:  Jennifer Russo Wortman; Jane Mabey Gilsenan; Vinita Joardar; Jennifer Deegan; John Clutterbuck; Mikael R Andersen; David Archer; Mojca Bencina; Gerhard Braus; Pedro Coutinho; Hans von Döhren; John Doonan; Arnold J M Driessen; Pawel Durek; Eduardo Espeso; Erzsébet Fekete; Michel Flipphi; Carlos Garcia Estrada; Steven Geysens; Gustavo Goldman; Piet W J de Groot; Kim Hansen; Steven D Harris; Thorsten Heinekamp; Kerstin Helmstaedt; Bernard Henrissat; Gerald Hofmann; Tim Homan; Tetsuya Horio; Hiroyuki Horiuchi; Steve James; Meriel Jones; Levente Karaffa; Zsolt Karányi; Masashi Kato; Nancy Keller; Diane E Kelly; Jan A K W Kiel; Jung-Mi Kim; Ida J van der Klei; Frans M Klis; Andriy Kovalchuk; Nada Krasevec; Christian P Kubicek; Bo Liu; Andrew Maccabe; Vera Meyer; Pete Mirabito; Márton Miskei; Magdalena Mos; Jonathan Mullins; David R Nelson; Jens Nielsen; Berl R Oakley; Stephen A Osmani; Tiina Pakula; Andrzej Paszewski; Ian Paulsen; Sebastian Pilsyk; István Pócsi; Peter J Punt; Arthur F J Ram; Qinghu Ren; Xavier Robellet; Geoff Robson; Bernhard Seiboth; Piet van Solingen; Thomas Specht; Jibin Sun; Naimeh Taheri-Talesh; Norio Takeshita; Dave Ussery; Patricia A vanKuyk; Hans Visser; Peter J I van de Vondervoort; Ronald P de Vries; Jonathan Walton; Xin Xiang; Yi Xiong; An Ping Zeng; Bernd W Brandt; Michael J Cornell; Cees A M J J van den Hondel; Jacob Visser; Stephen G Oliver; Geoffrey Turner
Journal:  Fungal Genet Biol       Date:  2008-12-25       Impact factor: 3.495

Review 8.  Unlocking fungal cryptic natural products.

Authors:  Yi-Ming Chiang; Kuan-Han Lee; James F Sanchez; Nancy P Keller; Clay C C Wang
Journal:  Nat Prod Commun       Date:  2009-11       Impact factor: 0.986

9.  Accurate prediction of secondary metabolite gene clusters in filamentous fungi.

Authors:  Mikael R Andersen; Jakob B Nielsen; Andreas Klitgaard; Lene M Petersen; Mia Zachariasen; Tilde J Hansen; Lene H Blicher; Charlotte H Gotfredsen; Thomas O Larsen; Kristian F Nielsen; Uffe H Mortensen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

10.  Chromatin-level regulation of biosynthetic gene clusters.

Authors:  Jin Woo Bok; Yi-Ming Chiang; Edyta Szewczyk; Yazmid Reyes-Dominguez; Ashley D Davidson; James F Sanchez; Hsien-Chun Lo; Kenji Watanabe; Joseph Strauss; Berl R Oakley; Clay C C Wang; Nancy P Keller
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

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