Literature DB >> 24142336

Prospecting genomes for lasso peptides.

Mikhail O Maksimov1, A James Link.   

Abstract

Genome mining has unlocked a veritable treasure chest of natural compounds. However, each family of natural products requires a genome-mining approach tailored to its unique features to be successful. Lasso peptides are ribosomally synthesized and posttranslationally modified products with a unique three-dimensional structure. Advances in the understanding of these molecules have informed the design of strategies to identify new members of the class in sequenced genomes. This review presents the bioinformatic methods used to discover novel lasso peptides and describes how such analyses have afforded insights into the biosynthesis and evolution of this peptide class.

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Year:  2013        PMID: 24142336     DOI: 10.1007/s10295-013-1357-4

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  45 in total

1.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

2.  The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase.

Authors:  Konstantin Kuznedelov; Ekaterina Semenova; Thomas A Knappe; Damir Mukhamedyarov; Aashish Srivastava; Sujoy Chatterjee; Richard H Ebright; Mohamed A Marahiel; Konstantin Severinov
Journal:  J Mol Biol       Date:  2011-03-15       Impact factor: 5.469

3.  Structure of thermolysin cleaved microcin J25: extreme stability of a two-chain antimicrobial peptide devoid of covalent links.

Authors:  K Johan Rosengren; Alain Blond; Carlos Afonso; Jean-Claude Tabet; Sylvie Rebuffat; David J Craik
Journal:  Biochemistry       Date:  2004-04-27       Impact factor: 3.162

4.  Lasso peptides from proteobacteria: Genome mining employing heterologous expression and mass spectrometry.

Authors:  Julian D Hegemann; Marcel Zimmermann; Shaozhou Zhu; Dennis Klug; Mohamed A Marahiel
Journal:  Biopolymers       Date:  2013-09       Impact factor: 2.505

5.  Two enzymes catalyze the maturation of a lasso peptide in Escherichia coli.

Authors:  Sophie Duquesne; Delphine Destoumieux-Garzón; Séverine Zirah; Christophe Goulard; Jean Peduzzi; Sylvie Rebuffat
Journal:  Chem Biol       Date:  2007-07

6.  Insights into the biosynthesis and stability of the lasso peptide capistruin.

Authors:  Thomas A Knappe; Uwe Linne; Lars Robbel; Mohamed A Marahiel
Journal:  Chem Biol       Date:  2009-12-24

7.  Anantin--a peptide antagonist of the atrial natriuretic factor (ANF). II. Determination of the primary sequence by NMR on the basis of proton assignments.

Authors:  D F Wyss; H W Lahm; M Manneberg; A M Labhardt
Journal:  J Antibiot (Tokyo)       Date:  1991-02       Impact factor: 2.649

8.  Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel.

Authors:  Jayanta Mukhopadhyay; Elena Sineva; Jennifer Knight; Ronald M Levy; Richard H Ebright
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

9.  BAGEL: a web-based bacteriocin genome mining tool.

Authors:  Anne de Jong; Sacha A F T van Hijum; Jetta J E Bijlsma; Jan Kok; Oscar P Kuipers
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

Review 10.  Follow the leader: the use of leader peptides to guide natural product biosynthesis.

Authors:  Trent J Oman; Wilfred A van der Donk
Journal:  Nat Chem Biol       Date:  2010-01       Impact factor: 15.040

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  31 in total

1.  Elucidating the Specificity Determinants of the AtxE2 Lasso Peptide Isopeptidase.

Authors:  Mikhail O Maksimov; Joseph D Koos; Chuhan Zong; Bozhena Lisko; A James Link
Journal:  J Biol Chem       Date:  2015-11-03       Impact factor: 5.157

2.  Discovery of Ubonodin, an Antimicrobial Lasso Peptide Active against Members of the Burkholderia cepacia Complex.

Authors:  Wai Ling Cheung-Lee; Madison E Parry; Chuhan Zong; Alexis Jaramillo Cartagena; Seth A Darst; Nancy D Connell; Riccardo Russo; A James Link
Journal:  Chembiochem       Date:  2020-01-03       Impact factor: 3.164

3.  Enzymatic N- and C-Protection in Cyanobactin RiPP Natural Products.

Authors:  Debosmita Sardar; Yue Hao; Zhenjian Lin; Maho Morita; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2017-02-15       Impact factor: 15.419

4.  Reporter-Guided Transposon Mutant Selection for Activation of Silent Gene Clusters in Burkholderia thailandensis.

Authors:  Dainan Mao; Aya Yoshimura; Rurun Wang; Mohammad R Seyedsayamdost
Journal:  Chembiochem       Date:  2020-03-03       Impact factor: 3.164

5.  Heterologous and in Vitro Reconstitution of Fuscanodin, a Lasso Peptide from Thermobifida fusca.

Authors:  Joseph D Koos; A James Link
Journal:  J Am Chem Soc       Date:  2018-12-27       Impact factor: 15.419

6.  Facile Removal of Leader Peptides from Lanthipeptides by Incorporation of a Hydroxy Acid.

Authors:  Noah A Bindman; Silvia C Bobeica; Wenshe R Liu; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2015-06-01       Impact factor: 15.419

7.  Evidence of Cis/Trans-Isomerization at Pro7/Pro16 in the Lasso Peptide Microcin J25.

Authors:  Kevin Jeanne Dit Fouque; Julian D Hegemann; Séverine Zirah; Sylvie Rebuffat; Ewen Lescop; Francisco Fernandez-Lima
Journal:  J Am Soc Mass Spectrom       Date:  2019-03-04       Impact factor: 3.109

8.  Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk.

Authors:  Domonique A Carson; Herman W Barkema; Sohail Naushad; Jeroen De Buck
Journal:  Appl Environ Microbiol       Date:  2017-08-17       Impact factor: 4.792

9.  Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea.

Authors:  Shinya Kodani; Hikaru Hemmi; Yuto Miyake; Issara Kaweewan; Hiroyuki Nakagawa
Journal:  J Ind Microbiol Biotechnol       Date:  2018-09-06       Impact factor: 3.346

Review 10.  How to harness biosynthetic gene clusters of lasso peptides.

Authors:  Shinya Kodani; Kohta Unno
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-23       Impact factor: 3.346

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