Literature DB >> 25739345

A Query Tool for Investigator Access to the Data and Images of the National Lung Screening Trial.

Paul K Commean1, Joshua M Rathmell, Ken W Clark, Dave R Maffitt, Fred W Prior.   

Abstract

The National Cancer Institute (NCI), in conjunction with blinded university, provides a mechanism to enable public access to the study data, CT radiology images, and pathology images from the National Lung Screening Trial (NLST). Access to the data and images is through the NCI-sponsored, blinded university-hosted The Cancer Imaging Archive (TCIA), a repository of more than 40 study collections of cancer images. Once access to the NLST data has been granted by NCI, a Query Tool within TCIA is used to access the NLST data and images. The Query Tool is a simple-to-use menu-driven database application designed to quickly pose queries and retrieve/save results (from 53,452 NLST participants), download CT images (~20 million available), and view pathology images (~1200 available). NLST study data are contained in 17 Query Tool tables with ~370 variables to query. This paper describes Query Tool design, functionality, and usefulness for researchers, clinicians, and software developers to query data, save query results, and download/view images.

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Year:  2015        PMID: 25739345      PMCID: PMC4501962          DOI: 10.1007/s10278-015-9785-5

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  5 in total

1.  The National Lung Screening Trial: overview and study design.

Authors:  Denise R Aberle; Christine D Berg; William C Black; Timothy R Church; Richard M Fagerstrom; Barbara Galen; Ilana F Gareen; Constantine Gatsonis; Jonathan Goldin; John K Gohagan; Bruce Hillman; Carl Jaffe; Barnett S Kramer; David Lynch; Pamela M Marcus; Mitchell Schnall; Daniel C Sullivan; Dorothy Sullivan; Carl J Zylak
Journal:  Radiology       Date:  2010-11-02       Impact factor: 11.105

2.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

3.  Reduced lung-cancer mortality with low-dose computed tomographic screening.

Authors:  Denise R Aberle; Amanda M Adams; Christine D Berg; William C Black; Jonathan D Clapp; Richard M Fagerstrom; Ilana F Gareen; Constantine Gatsonis; Pamela M Marcus; JoRean D Sicks
Journal:  N Engl J Med       Date:  2011-06-29       Impact factor: 91.245

4.  TCIA: An information resource to enable open science.

Authors:  Fred W Prior; Ken Clark; Paul Commean; John Freymann; Carl Jaffe; Justin Kirby; Stephen Moore; Kirk Smith; Lawrence Tarbox; Bruce Vendt; Guillermo Marquez
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

5.  A data model and database for high-resolution pathology analytical image informatics.

Authors:  Fusheng Wang; Jun Kong; Lee Cooper; Tony Pan; Tahsin Kurc; Wenjin Chen; Ashish Sharma; Cristobal Niedermayr; Tae W Oh; Daniel Brat; Alton B Farris; David J Foran; Joel Saltz
Journal:  J Pathol Inform       Date:  2011-07-26
  5 in total
  3 in total

1.  Open access image repositories: high-quality data to enable machine learning research.

Authors:  F Prior; J Almeida; P Kathiravelu; T Kurc; K Smith; T J Fitzgerald; J Saltz
Journal:  Clin Radiol       Date:  2019-04-28       Impact factor: 2.350

2.  LUNGx Challenge for computerized lung nodule classification.

Authors:  Samuel G Armato; Karen Drukker; Feng Li; Lubomir Hadjiiski; Georgia D Tourassi; Roger M Engelmann; Maryellen L Giger; George Redmond; Keyvan Farahani; Justin S Kirby; Laurence P Clarke
Journal:  J Med Imaging (Bellingham)       Date:  2016-12-19

3.  How Will Big Data Improve Clinical and Basic Research in Radiation Therapy?

Authors:  Barry S Rosenstein; Jacek Capala; Jason A Efstathiou; Jeff Hammerbacher; Sarah L Kerns; Feng-Ming Spring Kong; Harry Ostrer; Fred W Prior; Bhadrasain Vikram; John Wong; Ying Xiao
Journal:  Int J Radiat Oncol Biol Phys       Date:  2015-11-11       Impact factor: 7.038

  3 in total

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