Literature DB >> 11236999

Mining the draft human genome.

E Birney1, A Bateman, M E Clamp, T J Hubbard.   

Abstract

Now that the draft human genome sequence is available, everyone wants to be able to use it. However, we have perhaps become complacent about our ability to turn new genomes into lists of genes. The higher volume of data associated with a larger genome is accompanied by a much greater increase in complexity. We need to appreciate both the scale of the challenge of vertebrate genome analysis and the limitations of current gene prediction methods and understanding.

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Year:  2001        PMID: 11236999      PMCID: PMC2658632          DOI: 10.1038/35057004

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  13 in total

1.  Can sequencing shed light on cell cycling?

Authors:  A W Murray; D Marks
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  Genomics, the cytoskeleton and motility.

Authors:  T D Pollard
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  Expressing the human genome.

Authors:  R Tupler; G Perini; M R Green
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  A genomic view of immunology.

Authors:  A M Fahrer; J F Bazan; P Papathanasiou; K A Nelms; C C Goodnow
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

5.  Keeping time with the human genome.

Authors:  J D Clayton; C P Kyriacou; S M Reppert
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

6.  A genomic perspective on membrane compartment organization.

Authors:  J B Bock; H T Matern; A A Peden; R H Scheller
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

7.  Learning about addiction from the genome.

Authors:  E J Nestler; D Landsman
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

8.  Using GeneWise in the Drosophila annotation experiment.

Authors:  E Birney; R Durbin
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

9.  Genie--gene finding in Drosophila melanogaster.

Authors:  M G Reese; D Kulp; H Tammana; D Haussler
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

10.  Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis.

Authors:  H Roest Crollius; O Jaillon; C Dasilva; C Ozouf-Costaz; C Fizames; C Fischer; L Bouneau; A Billault; F Quetier; W Saurin; A Bernot; J Weissenbach
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

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  17 in total

1.  An efficient algorithm for large-scale detection of protein families.

Authors:  A J Enright; S Van Dongen; C A Ouzounis
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

2.  Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Authors:  Paul M Harrison; Hedi Hegyi; Suganthi Balasubramanian; Nicholas M Luscombe; Paul Bertone; Nathaniel Echols; Ted Johnson; Mark Gerstein
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

3.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

4.  Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul M Harrison; Yin Liu; Mark Gerstein
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

5.  Future directions in protein function prediction.

Authors:  Ihsan A Shehadi; Huyuan Yang; Mary Jo Ondrechen
Journal:  Mol Biol Rep       Date:  2002-12       Impact factor: 2.316

6.  Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul Harrison; Mark Gerstein
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

7.  Protein families and TRIBES in genome sequence space.

Authors:  Anton J Enright; Victor Kunin; Christos A Ouzounis
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

8.  Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network.

Authors:  Ulrich Harttig; Anthony J Travis; Philippe Rocca-Serra; Marten Renkema; Ben van Ommen; Heiner Boeing
Journal:  Genes Nutr       Date:  2009-04-30       Impact factor: 5.523

9.  THEMATICS: a simple computational predictor of enzyme function from structure.

Authors:  M J Ondrechen; J G Clifton; D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

10.  Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays.

Authors:  Hongyue Dai; Michael Meyer; Sergey Stepaniants; Michael Ziman; Roland Stoughton
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

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