Literature DB >> 28529815

"RADIOTRANSCRIPTOMICS": A synergy of imaging and transcriptomics in clinical assessment.

Amal Katrib1, William Hsu2, Alex Bui2, Yi Xing1.   

Abstract

Recent advances in quantitative imaging and "omics" technology have generated a wealth of mineable biological "big data". With the push towards a P4 "predictive, preventive, personalized, and participatory" approach to medicine, researchers began integrating complementary tools to further tune existing diagnostic and therapeutic models. The field of radiogenomics has long pioneered such multidisciplinary investigations in neuroscience and oncology, correlating genotypic and phenotypic signatures to study structural and functional changes in relation to altered molecular behavior. Given the innate dynamic nature of complex disorders and the role of environmental and epigenetic factors in pathogenesis, the transcriptome can further elucidate serial modifications undetected at the genome level. We therefore propose "radiotranscriptomics" as a new member of the P4 medicine initiative, combining transcriptome information, including gene expression and isoform variation, and quantitative image annotations.

Entities:  

Keywords:  RNA-seq; genomics; image genomics; precision medicine; quantitative imaging; radiogenomics; systems biology; transcriptomics

Year:  2016        PMID: 28529815      PMCID: PMC5436905          DOI: 10.1007/s40484-016-0061-6

Source DB:  PubMed          Journal:  Quant Biol        ISSN: 2095-4689


  76 in total

1.  Improved optimization for the robust and accurate linear registration and motion correction of brain images.

Authors:  Mark Jenkinson; Peter Bannister; Michael Brady; Stephen Smith
Journal:  Neuroimage       Date:  2002-10       Impact factor: 6.556

2.  Multiparametric imaging of tumor response to therapy.

Authors:  Anwar R Padhani; Kenneth A Miles
Journal:  Radiology       Date:  2010-08       Impact factor: 11.105

3.  Voxel based versus region of interest analysis in diffusion tensor imaging of neurodevelopment.

Authors:  Lindsay Snook; Chris Plewes; Christian Beaulieu
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

4.  MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set.

Authors:  David A Gutman; Lee A D Cooper; Scott N Hwang; Chad A Holder; Jingjing Gao; Tarun D Aurora; William D Dunn; Lisa Scarpace; Tom Mikkelsen; Rajan Jain; Max Wintermark; Manal Jilwan; Prashant Raghavan; Erich Huang; Robert J Clifford; Pattanasak Mongkolwat; Vladimir Kleper; John Freymann; Justin Kirby; Pascal O Zinn; Carlos S Moreno; Carl Jaffe; Rivka Colen; Daniel L Rubin; Joel Saltz; Adam Flanders; Daniel J Brat
Journal:  Radiology       Date:  2013-02-07       Impact factor: 11.105

Review 5.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

Review 6.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

7.  White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.

Authors:  Emma Sprooten; Kathryn M Fleming; Pippa A Thomson; Mark E Bastin; Heather C Whalley; Jeremy Hall; Jess E Sussmann; James McKirdy; Douglas Blackwood; Stephen M Lawrie; Andrew M McIntosh
Journal:  Psychiatry Res       Date:  2012-12-04       Impact factor: 3.222

8.  Radiogenomic mapping of edema/cellular invasion MRI-phenotypes in glioblastoma multiforme.

Authors:  Pascal O Zinn; Bhanu Mahajan; Bhanu Majadan; Pratheesh Sathyan; Sanjay K Singh; Sadhan Majumder; Ferenc A Jolesz; Rivka R Colen
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

9.  Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification.

Authors:  Leticia Gallardo-Estrella; David A Lynch; Mathias Prokop; Douglas Stinson; Jordan Zach; Philip F Judy; Bram van Ginneken; Eva M van Rikxoort
Journal:  Eur Radiol       Date:  2015-05-23       Impact factor: 5.315

10.  Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: a pilot project of the ENIGMA-DTI working group.

Authors:  Neda Jahanshad; Peter V Kochunov; Emma Sprooten; René C Mandl; Thomas E Nichols; Laura Almasy; John Blangero; Rachel M Brouwer; Joanne E Curran; Greig I de Zubicaray; Ravi Duggirala; Peter T Fox; L Elliot Hong; Bennett A Landman; Nicholas G Martin; Katie L McMahon; Sarah E Medland; Braxton D Mitchell; Rene L Olvera; Charles P Peterson; John M Starr; Jessika E Sussmann; Arthur W Toga; Joanna M Wardlaw; Margaret J Wright; Hilleke E Hulshoff Pol; Mark E Bastin; Andrew M McIntosh; Ian J Deary; Paul M Thompson; David C Glahn
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

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  3 in total

1.  Deep phenotyping for precision medicine in Parkinson's disease.

Authors:  Ann-Kathrin Schalkamp; Nabila Rahman; Jimena Monzón-Sandoval; Cynthia Sandor
Journal:  Dis Model Mech       Date:  2022-06-01       Impact factor: 5.732

Review 2.  Single-Cell Transcriptomics Bioinformatics and Computational Challenges.

Authors:  Olivier B Poirion; Xun Zhu; Travers Ching; Lana Garmire
Journal:  Front Genet       Date:  2016-09-21       Impact factor: 4.599

3.  Radiotranscriptomics signature-based predictive nomograms for radiotherapy response in patients with nonsmall cell lung cancer: Combination and association of CT features and serum miRNAs levels.

Authors:  Liyuan Fan; Qiang Cao; Xiuping Ding; Dongni Gao; Qiwei Yang; Baosheng Li
Journal:  Cancer Med       Date:  2020-05-27       Impact factor: 4.452

  3 in total

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