Literature DB >> 24109363

2-Cyano-1-methyl-pyridinium iodide.

Michael N Kammer1, Lynn V Koplitz, Joel T Mague.   

Abstract

The cation in the title compound, C7H7N2 (+)·I(-), is planar (r.m.s. deviation for the nine fitted non-H atoms = 0.040 Å). The crystal packing is best described as undulating layers of cations and anions associated via C-H⋯I inter-actions.

Entities:  

Year:  2013        PMID: 24109363      PMCID: PMC3793776          DOI: 10.1107/S1600536813019302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 2-cyano-N-methyl­pyridinium nitrate, see: Koplitz et al. (2012 ▶). For structures of 3-cyano-N-methyl­pyridinium salts, see: Koplitz et al. (2003 ▶); Mague et al. (2005 ▶). For structures of 4-cyano-N-methyl­pyridinium salts, see: Kammer, Koplitz & Mague (2012 ▶); Kammer, Mague & Koplitz (2012 ▶).

Experimental

Crystal data

C7H7N2 +·I− M = 246.05 Orthorhombic, a = 9.5785 (6) Å b = 8.5687 (5) Å c = 20.2229 (13) Å V = 1659.80 (18) Å3 Z = 8 Mo Kα radiation μ = 3.79 mm−1 T = 100 K 0.16 × 0.14 × 0.07 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 2009 ▶) T min = 0.58, T max = 0.77 58292 measured reflections 53390 independent reflections 40858 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.091 S = 1.03 53390 reflections 93 parameters H-atom parameters constrained Δρmax = 1.14 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2013 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL and CELL_NOW (Sheldrick, 2008b ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019302/tk5240sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019302/tk5240Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019302/tk5240Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7N2+·IDx = 1.969 Mg m3
Mr = 246.05Melting point: 146 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
a = 9.5785 (6) ÅCell parameters from 4287 reflections
b = 8.5687 (5) Åθ = 2.9–28.7°
c = 20.2229 (13) ŵ = 3.79 mm1
V = 1659.80 (18) Å3T = 100 K
Z = 8Slab, yellow
F(000) = 9280.16 × 0.14 × 0.07 mm
Bruker SMART APEX CCD diffractometer53390 independent reflections
Radiation source: fine-focus sealed tube40858 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 8.3660 pixels mm-1θmax = 28.7°, θmin = 2.0°
φ and ω scansh = −12→12
Absorption correction: multi-scan (TWINABS; Sheldrick, 2009)k = −11→11
Tmin = 0.58, Tmax = 0.77l = −26→27
58292 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0143P)2 + 0.7747P] where P = (Fo2 + 2Fc2)/3
53390 reflections(Δ/σ)max < 0.001
93 parametersΔρmax = 1.14 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
I10.41161 (3)0.07802 (3)0.10870 (2)0.01550 (12)
N10.9765 (4)1.0275 (5)0.1442 (2)0.0135 (9)
N20.7422 (4)0.7530 (5)0.2022 (2)0.0205 (10)
C11.0446 (5)0.9818 (6)0.2072 (3)0.0187 (11)
H1A1.13371.03710.21160.028*
H1B1.06150.86900.20720.028*
H1C0.98371.00920.24430.028*
C20.8562 (5)0.9559 (6)0.1244 (3)0.0142 (10)
C30.7917 (5)0.9967 (6)0.0661 (3)0.0158 (11)
H30.70740.94710.05300.019*
C40.8517 (5)1.1118 (6)0.0268 (3)0.0168 (11)
H40.81051.1395−0.01430.020*
C50.9713 (5)1.1848 (6)0.0481 (3)0.0166 (11)
H51.01221.26480.02200.020*
C61.0321 (5)1.1424 (5)0.1070 (3)0.0149 (10)
H61.11401.19450.12160.018*
C70.7957 (5)0.8415 (6)0.1685 (3)0.0165 (11)
U11U22U33U12U13U23
I10.01513 (19)0.01697 (18)0.01439 (19)0.00131 (12)−0.00021 (13)−0.00058 (13)
N10.013 (2)0.014 (2)0.014 (2)0.0017 (16)0.0001 (18)−0.0019 (17)
N20.022 (2)0.020 (2)0.019 (2)−0.0019 (19)0.001 (2)−0.0010 (19)
C10.020 (3)0.022 (3)0.014 (3)−0.001 (2)−0.004 (2)0.001 (2)
C20.012 (2)0.014 (2)0.016 (3)−0.0010 (19)0.003 (2)−0.003 (2)
C30.013 (3)0.016 (2)0.018 (3)0.0006 (19)0.000 (2)−0.003 (2)
C40.019 (3)0.017 (2)0.014 (3)0.004 (2)−0.001 (2)−0.002 (2)
C50.017 (3)0.014 (2)0.020 (3)0.0014 (19)0.003 (2)0.000 (2)
C60.012 (2)0.011 (2)0.021 (3)0.0023 (18)0.003 (2)−0.002 (2)
C70.015 (2)0.019 (3)0.016 (3)0.001 (2)−0.001 (2)−0.006 (2)
N1—C61.348 (6)C2—C71.446 (7)
N1—C21.366 (6)C3—C41.391 (7)
N1—C11.484 (6)C3—H30.9500
N2—C71.141 (6)C4—C51.375 (7)
C1—H1A0.9800C4—H40.9500
C1—H1B0.9800C5—C61.375 (7)
C1—H1C0.9800C5—H50.9500
C2—C31.375 (7)C6—H60.9500
C6—N1—C2119.8 (4)C2—C3—H3120.5
C6—N1—C1119.9 (4)C4—C3—H3120.5
C2—N1—C1120.3 (4)C5—C4—C3119.1 (5)
N1—C1—H1A109.5C5—C4—H4120.4
N1—C1—H1B109.5C3—C4—H4120.4
H1A—C1—H1B109.5C6—C5—C4120.3 (5)
N1—C1—H1C109.5C6—C5—H5119.8
H1A—C1—H1C109.5C4—C5—H5119.8
H1B—C1—H1C109.5N1—C6—C5120.6 (5)
N1—C2—C3121.1 (4)N1—C6—H6119.7
N1—C2—C7117.5 (4)C5—C6—H6119.7
C3—C2—C7121.4 (5)N2—C7—C2176.9 (6)
C2—C3—C4119.0 (5)
C6—N1—C2—C31.3 (7)C2—C3—C4—C5−2.0 (7)
C1—N1—C2—C3−180.0 (5)C3—C4—C5—C61.2 (7)
C6—N1—C2—C7−175.6 (4)C2—N1—C6—C5−2.2 (7)
C1—N1—C2—C73.1 (7)C1—N1—C6—C5179.1 (4)
N1—C2—C3—C40.7 (7)C4—C5—C6—N10.9 (7)
C7—C2—C3—C4177.5 (5)
D—H···AD—HH···AD···AD—H···A
C1—H1B···I1i0.983.204.014 (5)141
C1—H1C···I1ii0.983.114.021 (5)156
C5—H5···I1iii0.953.123.810 (5)131
C6—H6···I1iv0.953.033.677 (5)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1B⋯I1i 0.983.204.014 (5)141
C1—H1C⋯I1ii 0.983.114.021 (5)156
C5—H5⋯I1iii 0.953.123.810 (5)131
C6—H6⋯I1iv 0.953.033.677 (5)126

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Cyano-1-methyl-pyridinium iodide.

Authors:  Michael N Kammer; Lynn V Koplitz; Joel T Mague
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-21

3.  4-Cyano-1-methyl-pyridinium bromide.

Authors:  Michael N Kammer; Joel T Mague; Lynn V Koplitz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10
  3 in total
  5 in total

1.  2-Cyano-anilinium iodide.

Authors:  David J Vumbaco; Michael N Kammer; Lynn V Koplitz; Joel T Mague
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20

2.  Crystal structure of 2-cyano-1-methyl-pyridinium perchlorate.

Authors:  Vu D Nguyen; Cameron A McCormick; Joel T Mague; Lynn V Koplitz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-17

3.  Crystal structure of 2-cyano-1-methyl-pyridinium bromide.

Authors:  Vu D Nguyen; Cameron A McCormick; Robert A Pascal; Joel T Mague; Lynn V Koplitz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-17

4.  Crystal structure of 2-cyano-1-methyl-pyridinium tetra-fluoro-borate.

Authors:  Francesca A Vaccaro; Lynn V Koplitz; Joel T Mague
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-12

5.  Crystal structures of the hexa-fluorido-phosphate salts of the isomeric 2-, 3- and 4-cyano-1-methyl-pyridinium cations and determination of solid-state inter-action energies.

Authors:  Joel T Mague; Erin Larrabee; David Olivier; Francesca Vaccaro; Kevin E Riley; Lynn V Koplitz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-24
  5 in total

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