Literature DB >> 26594429

Crystal structure of 2-cyano-1-methyl-pyridinium tetra-fluoro-borate.

Francesca A Vaccaro1, Lynn V Koplitz1, Joel T Mague2.   

Abstract

The asymmetric unit of the title salt, C7H7N2 (+)·BF4 (-), comprises two independent but nearly identical formula units. The solid-state structure comprises corrugated layers of cations and anions, formed by C-H⋯F hydrogen bonding, that are approximately parallel to (010). Further C-H⋯F hydrogen bonding consolidates the three-dimensional architecture. The sample was refined as a two-component non-merohedral twin.

Entities:  

Keywords:  C—H⋯F inter­actions; crystal structure; salt

Year:  2015        PMID: 26594429      PMCID: PMC4647419          DOI: 10.1107/S2056989015016011

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For structures of other salts of the 2-cyano-1-methyl­pyridinium cation, see: Koplitz et al. (2012 ▸); Kammer et al. (2013 ▸). For structures of salts of the isomeric 2-cyano­anilinium cation, see: Zhang (2009 ▸); Cui & Chen (2010 ▸).

Experimental

Crystal data

C7H7N2 +·BF4 M = 205.96 Monoclinic, a = 7.9704 (16) Å b = 7.5527 (15) Å c = 14.570 (3) Å β = 90.312 (3)° V = 877.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 150 K 0.14 × 0.13 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.70, T max = 0.99 16120 measured reflections 4566 independent reflections 3779 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.122 S = 1.08 4566 reflections 256 parameters 1 restraint H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: the absolute structure could not be determined with certainty in this light-atom structure

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015016011/tk5380sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016011/tk5380Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016011/tk5380Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015016011/tk5380fig1.tif Perspective view of the asymmetric unit with 50% probability ellipsoids. The C—H⋯F inter­action is shown by a dotted line. Click here for additional data file. a . DOI: 10.1107/S2056989015016011/tk5380fig2.tif Packing viewed down the a axis showing an edge view of two corrugated layers and the C—H⋯F inter­actions (dotted lines) holding them together. Click here for additional data file. b . DOI: 10.1107/S2056989015016011/tk5380fig3.tif Packing viewed down the b axis providing a plan view of the corrugated sheets with C—H⋯F inter­actions shown as dotted lines. CCDC reference: 1420782 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H7N2+·BF4F(000) = 416
Mr = 205.96Dx = 1.560 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.9704 (16) ÅCell parameters from 8457 reflections
b = 7.5527 (15) Åθ = 2.6–29.0°
c = 14.570 (3) ŵ = 0.15 mm1
β = 90.312 (3)°T = 150 K
V = 877.1 (3) Å3Block, colourless
Z = 40.14 × 0.13 × 0.08 mm
Bruker SMART APEX CCD diffractometer4566 independent reflections
Radiation source: fine-focus sealed tube3779 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.057
Detector resolution: 8.3660 pixels mm-1θmax = 29.3°, θmin = 2.6°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −10→10
Tmin = 0.70, Tmax = 0.99l = −19→19
16120 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0572P)2 + 0.091P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
4566 reflectionsΔρmax = 0.33 e Å3
256 parametersΔρmin = −0.27 e Å3
1 restraintAbsolute structure: The absolute structure could not be determined with certainty in this light-atom structure
Primary atom site location: structure-invariant direct methods
Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5° in ω, collected at φ = 0.00, 90.00 and 180.00° and 2 sets of 800 frames, each of width 0.45° in φ, collected at ω = -30.00 and 210.00°. The scan time was 10 sec/frame.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å). All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. In the late stages of the refinement a consistent pattern of Fo2 >> Fc2 suggested twinning not yet accounted for. Use of the TwinRotMat routine in PLATON (Spek, 2009) generated the twin law -1 0 0 0 - 1 0 0 0 1, inclusion of which enabled satisfactory refinement as a 2-component twin.
xyzUiso*/Ueq
N10.7369 (5)0.1294 (4)0.8819 (3)0.0220 (7)
N20.3067 (5)0.0851 (7)0.8963 (3)0.0416 (11)
C10.6868 (6)0.1642 (6)0.7854 (3)0.0273 (10)
H1A0.78260.21260.75180.041*
H1B0.59430.24970.78410.041*
H1C0.65040.05340.75650.041*
C20.8990 (6)0.1331 (6)0.9067 (3)0.0264 (9)
H20.98070.16290.86200.032*
C30.9511 (6)0.0952 (7)0.9947 (3)0.0299 (10)
H31.06710.09731.01000.036*
C40.8341 (6)0.0543 (6)1.0601 (3)0.0283 (10)
H40.86780.02811.12130.034*
C50.6652 (6)0.0520 (6)1.0352 (3)0.0274 (9)
H50.58190.02541.07950.033*
C60.6204 (5)0.0884 (6)0.9464 (3)0.0232 (8)
C70.4472 (6)0.0856 (7)0.9165 (3)0.0295 (10)
B10.7236 (7)0.6589 (6)0.8140 (3)0.0242 (10)
F10.7151 (4)0.5195 (3)0.8770 (2)0.0328 (6)
F20.8600 (4)0.7654 (4)0.8350 (2)0.0361 (7)
F30.5771 (3)0.7603 (4)0.8200 (2)0.0389 (7)
F40.7353 (4)0.5925 (4)0.72573 (19)0.0446 (8)
N30.7497 (5)0.3325 (5)0.3758 (2)0.0246 (8)
N41.1617 (6)0.4550 (8)0.3990 (3)0.0454 (12)
C80.8099 (6)0.3192 (7)0.2807 (3)0.0316 (10)
H8A0.91100.24550.27900.047*
H8B0.83610.43780.25750.047*
H8C0.72250.26550.24210.047*
C90.5886 (6)0.2988 (6)0.3939 (3)0.0292 (10)
H90.51480.26300.34600.035*
C100.5294 (6)0.3159 (6)0.4825 (3)0.0302 (10)
H100.41480.29260.49540.036*
C110.6365 (6)0.3668 (7)0.5519 (3)0.0310 (10)
H110.59620.37750.61290.037*
C120.8039 (6)0.4028 (6)0.5327 (3)0.0304 (10)
H120.87940.43870.57980.036*
C130.8566 (6)0.3847 (6)0.4439 (3)0.0255 (9)
C141.0267 (7)0.4226 (7)0.4190 (3)0.0327 (10)
B20.7732 (7)0.8421 (7)0.3142 (3)0.0273 (10)
F50.8153 (4)0.9543 (4)0.3856 (2)0.0435 (8)
F60.6889 (5)0.6960 (4)0.3476 (2)0.0500 (9)
F70.9153 (4)0.7890 (6)0.2691 (2)0.0569 (10)
F80.6664 (4)0.9294 (4)0.2535 (2)0.0464 (8)
U11U22U33U12U13U23
N10.0256 (18)0.0142 (16)0.0263 (17)0.0013 (14)0.0025 (15)−0.0004 (14)
N20.029 (2)0.059 (3)0.038 (2)0.004 (2)0.0041 (18)−0.002 (2)
C10.037 (3)0.022 (2)0.023 (2)−0.0010 (18)−0.0026 (18)0.0022 (17)
C20.023 (2)0.023 (2)0.033 (2)−0.0011 (16)0.0046 (19)−0.0008 (19)
C30.025 (2)0.033 (2)0.032 (2)0.0022 (19)−0.0025 (19)−0.002 (2)
C40.031 (2)0.029 (2)0.025 (2)0.0000 (18)−0.0006 (18)−0.0012 (18)
C50.031 (2)0.024 (2)0.027 (2)0.0002 (18)0.0039 (19)−0.0005 (18)
C60.023 (2)0.0174 (19)0.029 (2)0.0007 (16)0.0041 (17)−0.0020 (17)
C70.029 (2)0.028 (2)0.032 (2)0.0002 (18)0.0046 (19)−0.001 (2)
B10.029 (2)0.018 (2)0.026 (2)−0.0007 (19)0.001 (2)0.0018 (18)
F10.0440 (15)0.0189 (12)0.0355 (14)−0.0006 (12)−0.0028 (13)0.0047 (10)
F20.0336 (15)0.0254 (14)0.0492 (17)−0.0069 (12)−0.0028 (13)0.0005 (12)
F30.0311 (15)0.0235 (13)0.062 (2)0.0040 (12)0.0021 (14)0.0036 (13)
F40.069 (2)0.0343 (16)0.0304 (14)−0.0020 (16)0.0062 (15)−0.0067 (13)
N30.0326 (19)0.0141 (15)0.0270 (18)0.0007 (14)0.0007 (15)−0.0004 (14)
N40.034 (2)0.060 (3)0.042 (2)−0.008 (2)0.000 (2)0.005 (2)
C80.041 (3)0.025 (2)0.028 (2)−0.004 (2)0.004 (2)0.0001 (19)
C90.031 (2)0.023 (2)0.034 (2)−0.0023 (17)−0.005 (2)0.0003 (19)
C100.029 (2)0.023 (2)0.039 (3)−0.0003 (18)0.0034 (19)0.005 (2)
C110.037 (2)0.029 (2)0.027 (2)0.0017 (19)0.001 (2)0.0019 (19)
C120.034 (2)0.026 (2)0.032 (2)0.000 (2)−0.003 (2)0.0016 (19)
C130.029 (2)0.0147 (18)0.033 (2)0.0023 (16)−0.0026 (19)0.0026 (17)
C140.035 (3)0.031 (2)0.032 (2)−0.001 (2)−0.002 (2)0.002 (2)
B20.033 (3)0.023 (2)0.026 (2)−0.002 (2)0.002 (2)0.004 (2)
F50.061 (2)0.0328 (16)0.0363 (16)0.0103 (14)−0.0076 (16)−0.0078 (13)
F60.072 (2)0.0196 (14)0.059 (2)0.0019 (15)0.0198 (17)0.0098 (14)
F70.0376 (17)0.072 (3)0.061 (2)0.0042 (17)0.0157 (15)−0.0251 (19)
F80.057 (2)0.0294 (16)0.0522 (18)−0.0021 (14)−0.0197 (17)0.0099 (14)
N1—C21.340 (6)N3—C91.336 (6)
N1—C61.360 (6)N3—C131.362 (6)
N1—C11.484 (6)N3—C81.473 (6)
N2—C71.157 (6)N4—C141.143 (7)
C1—H1A0.9800C8—H8A0.9800
C1—H1B0.9800C8—H8B0.9800
C1—H1C0.9800C8—H8C0.9800
C2—C31.376 (7)C9—C101.382 (7)
C2—H20.9500C9—H90.9500
C3—C41.372 (7)C10—C111.375 (7)
C3—H30.9500C10—H100.9500
C4—C51.392 (6)C11—C121.392 (7)
C4—H40.9500C11—H110.9500
C5—C61.369 (6)C12—C131.370 (6)
C5—H50.9500C12—H120.9500
C6—C71.446 (6)C13—C141.434 (7)
B1—F41.384 (6)B2—F71.372 (6)
B1—F21.385 (6)B2—F61.382 (6)
B1—F11.398 (5)B2—F51.382 (6)
B1—F31.400 (6)B2—F81.391 (6)
C2—N1—C6118.7 (4)C9—N3—C13120.6 (4)
C2—N1—C1120.4 (4)C9—N3—C8119.4 (4)
C6—N1—C1120.9 (4)C13—N3—C8119.9 (4)
N1—C1—H1A109.5N3—C8—H8A109.5
N1—C1—H1B109.5N3—C8—H8B109.5
H1A—C1—H1B109.5H8A—C8—H8B109.5
N1—C1—H1C109.5N3—C8—H8C109.5
H1A—C1—H1C109.5H8A—C8—H8C109.5
H1B—C1—H1C109.5H8B—C8—H8C109.5
N1—C2—C3122.1 (4)N3—C9—C10119.9 (5)
N1—C2—H2118.9N3—C9—H9120.0
C3—C2—H2118.9C10—C9—H9120.0
C4—C3—C2119.5 (4)C11—C10—C9120.0 (4)
C4—C3—H3120.3C11—C10—H10120.0
C2—C3—H3120.3C9—C10—H10120.0
C3—C4—C5118.8 (4)C10—C11—C12119.9 (4)
C3—C4—H4120.6C10—C11—H11120.0
C5—C4—H4120.6C12—C11—H11120.0
C6—C5—C4119.4 (4)C13—C12—C11118.0 (5)
C6—C5—H5120.3C13—C12—H12121.0
C4—C5—H5120.3C11—C12—H12121.0
N1—C6—C5121.5 (4)N3—C13—C12121.5 (4)
N1—C6—C7116.7 (4)N3—C13—C14117.6 (4)
C5—C6—C7121.7 (4)C12—C13—C14120.9 (5)
N2—C7—C6177.1 (5)N4—C14—C13179.1 (6)
F4—B1—F2111.1 (4)F7—B2—F6109.9 (4)
F4—B1—F1109.9 (4)F7—B2—F5110.0 (4)
F2—B1—F1109.5 (4)F6—B2—F5110.0 (4)
F4—B1—F3108.5 (4)F7—B2—F8109.7 (4)
F2—B1—F3108.8 (4)F6—B2—F8107.8 (4)
F1—B1—F3109.1 (4)F5—B2—F8109.5 (4)
C6—N1—C2—C30.7 (7)C13—N3—C9—C10−0.4 (7)
C1—N1—C2—C3−177.6 (4)C8—N3—C9—C10−178.0 (4)
N1—C2—C3—C4−0.9 (8)N3—C9—C10—C11−0.3 (7)
C2—C3—C4—C50.2 (8)C9—C10—C11—C120.7 (8)
C3—C4—C5—C60.7 (7)C10—C11—C12—C13−0.3 (7)
C2—N1—C6—C50.2 (6)C9—N3—C13—C120.7 (7)
C1—N1—C6—C5178.5 (4)C8—N3—C13—C12178.4 (4)
C2—N1—C6—C7−179.9 (4)C9—N3—C13—C14−178.6 (4)
C1—N1—C6—C7−1.6 (6)C8—N3—C13—C14−0.9 (7)
C4—C5—C6—N1−0.9 (7)C11—C12—C13—N3−0.3 (7)
C4—C5—C6—C7179.2 (5)C11—C12—C13—C14178.9 (5)
D—H···AD—HH···AD···AD—H···A
C1—H1A···F7i0.982.503.407 (6)154
C1—H1B···F8ii0.982.543.498 (6)166
C1—H1C···F3iii0.982.473.214 (5)132
C2—H2···F7i0.952.293.190 (5)157
C3—H3···F1iv0.952.463.294 (6)147
C5—H5···F1v0.952.453.306 (5)149
C8—H8A···F2i0.982.483.159 (6)126
C8—H8C···F3ii0.982.553.437 (6)151
C9—H9···F3ii0.952.523.392 (6)152
C9—H9···F4ii0.952.593.476 (6)156
C10—H10···F6ii0.952.543.167 (6)123
C12—H12···F5i0.952.493.277 (6)141
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1AF7i 0.982.503.407(6)154
C1H1BF8ii 0.982.543.498(6)166
C1H1CF3iii 0.982.473.214(5)132
C2H2F7i 0.952.293.190(5)157
C3H3F1iv 0.952.463.294(6)147
C5H5F1v 0.952.453.306(5)149
C8H8AF2i 0.982.483.159(6)126
C8H8CF3ii 0.982.553.437(6)151
C9H9F3ii 0.952.523.392(6)152
C9H9F4ii 0.952.593.476(6)156
C10H10F6ii 0.952.543.167(6)123
C12H12F5i 0.952.493.277(6)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Cyano-anilinium perchlorate.

Authors:  Li-Jing Cui; Xin-Yuan Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

3.  2-Cyano-anilinium tetra-fluoro-borate.

Authors:  Yi Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

4.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  2-Cyano-1-methyl-pyridinium iodide.

Authors:  Michael N Kammer; Lynn V Koplitz; Joel T Mague
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20
  7 in total

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