| Literature DB >> 26594561 |
Vu D Nguyen1, Cameron A McCormick1, Joel T Mague2, Lynn V Koplitz1.
Abstract
The asymmetric unit of the title salt, C7H7N2 (+)·ClO4 (-), comprises two independent formula units. The solid-state structure comprises corrugated layers of cations and of anions, approximately parallel to (010). The supra-molecular layers are stabilized and connected by C-H⋯O hydrogen bonding to consolidate a three-dimensional architecture. A close pyridin-ium-perchlorate N⋯O contact [2.867 (5) Å] is noted. The crystal was refined as an inversion twin.Entities:
Keywords: crystal structure; hydrogen bonding; perchlorate; pyridinium; salt
Year: 2015 PMID: 26594561 PMCID: PMC4645073 DOI: 10.1107/S2056989015019155
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C7H7N2+·ClO4− | |
| Monoclinic, | Mo |
| Cell parameters from 9987 reflections | |
| θ = 2.5–29.2° | |
| µ = 0.41 mm−1 | |
| β = 90.982 (2)° | |
| Block, colourless | |
| 0.19 × 0.14 × 0.13 mm |
| Bruker SMART APEX CCD diffractometer | 22843 independent reflections |
| Radiation source: fine-focus sealed tube | 20913 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3660 pixels mm-1 | θmax = 29.2°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 22843 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 22843 reflections | Δρmax = 0.30 e Å−3 |
| 256 parameters | Δρmin = −0.34 e Å−3 |
| 1 restraint | Absolute structure: Flack |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.04 (3) |
| Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width
0.5° in ω, collected at φ = 0.00, 90.00 and 180.00° and 2 sets of 800
frames, each of width 0.45° in φ, collected at ω = -30.00 and 210.00°. The
scan time was 15 sec/frame. Analysis of 3152 reflections having I/σ(I) > 13
and chosen from the full data set with |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.2547 (4) | 0.1723 (5) | 0.8742 (2) | 0.0186 (7) | |
| N2 | 0.6652 (5) | 0.0531 (8) | 0.8975 (3) | 0.0424 (14) | |
| C1 | 0.3149 (5) | 0.1871 (7) | 0.7797 (3) | 0.0268 (10) | |
| H1A | 0.2255 | 0.2339 | 0.7406 | 0.040* | |
| H1B | 0.3474 | 0.0721 | 0.7577 | 0.040* | |
| H1C | 0.4115 | 0.2651 | 0.7785 | 0.040* | |
| C2 | 0.3617 (5) | 0.1208 (6) | 0.9418 (3) | 0.0204 (10) | |
| C3 | 0.3089 (5) | 0.1017 (7) | 1.0292 (3) | 0.0262 (11) | |
| H3 | 0.3845 | 0.0658 | 1.0759 | 0.031* | |
| C4 | 0.1425 (5) | 0.1359 (7) | 1.0482 (3) | 0.0261 (11) | |
| H4 | 0.1033 | 0.1237 | 1.1083 | 0.031* | |
| C5 | 0.0358 (5) | 0.1874 (7) | 0.9798 (3) | 0.0265 (11) | |
| H5 | −0.0780 | 0.2106 | 0.9921 | 0.032* | |
| C6 | 0.0947 (5) | 0.2053 (7) | 0.8927 (3) | 0.0237 (10) | |
| H6 | 0.0208 | 0.2414 | 0.8453 | 0.028* | |
| C7 | 0.5316 (5) | 0.0839 (8) | 0.9162 (3) | 0.0266 (11) | |
| Cl1 | 0.77813 (11) | 0.34996 (12) | 0.68489 (7) | 0.0185 (2) | |
| O1 | 0.9290 (4) | 0.2488 (5) | 0.6789 (3) | 0.0300 (8) | |
| O2 | 0.7857 (4) | 0.4925 (4) | 0.6214 (2) | 0.0263 (7) | |
| O3 | 0.6375 (4) | 0.2420 (5) | 0.6622 (3) | 0.0295 (9) | |
| O4 | 0.7628 (4) | 0.4142 (5) | 0.7754 (2) | 0.0370 (9) | |
| N3 | 0.7638 (4) | 0.8780 (5) | 0.6208 (3) | 0.0167 (8) | |
| N4 | 1.1905 (4) | 0.9228 (7) | 0.6055 (3) | 0.0374 (12) | |
| C8 | 0.8152 (5) | 0.8446 (7) | 0.7165 (3) | 0.0214 (9) | |
| H8A | 0.8523 | 0.9534 | 0.7448 | 0.032* | |
| H8B | 0.9070 | 0.7604 | 0.7181 | 0.032* | |
| H8C | 0.7203 | 0.7979 | 0.7497 | 0.032* | |
| C9 | 0.8788 (4) | 0.9197 (6) | 0.5573 (3) | 0.0187 (9) | |
| C10 | 0.8332 (5) | 0.9575 (7) | 0.4697 (3) | 0.0232 (10) | |
| H10 | 0.9152 | 0.9855 | 0.4263 | 0.028* | |
| C11 | 0.6647 (5) | 0.9542 (7) | 0.4452 (3) | 0.0254 (10) | |
| H11 | 0.6295 | 0.9816 | 0.3850 | 0.030* | |
| C12 | 0.5499 (5) | 0.9103 (7) | 0.5099 (4) | 0.0253 (11) | |
| H12 | 0.4345 | 0.9046 | 0.4942 | 0.030* | |
| C13 | 0.6021 (4) | 0.8747 (6) | 0.5969 (3) | 0.0214 (10) | |
| H13 | 0.5216 | 0.8472 | 0.6413 | 0.026* | |
| C14 | 1.0526 (5) | 0.9217 (7) | 0.5867 (4) | 0.0259 (11) | |
| Cl2 | 0.26845 (11) | 0.66595 (14) | 0.81449 (7) | 0.0213 (2) | |
| O5 | 0.3040 (4) | 0.5521 (5) | 0.8898 (2) | 0.0329 (9) | |
| O6 | 0.4209 (4) | 0.7202 (7) | 0.7750 (3) | 0.0629 (16) | |
| O7 | 0.1683 (5) | 0.5742 (6) | 0.7490 (3) | 0.0436 (10) | |
| O8 | 0.1756 (4) | 0.8134 (5) | 0.8449 (3) | 0.0405 (10) |
| N1 | 0.0224 (14) | 0.0147 (18) | 0.0187 (19) | −0.0010 (15) | 0.0002 (13) | 0.0016 (17) |
| N2 | 0.0285 (19) | 0.069 (4) | 0.030 (3) | 0.009 (2) | −0.0004 (17) | −0.009 (3) |
| C1 | 0.034 (2) | 0.026 (3) | 0.020 (2) | 0.004 (2) | 0.0063 (17) | 0.004 (2) |
| C2 | 0.0181 (16) | 0.018 (3) | 0.025 (3) | −0.0009 (15) | −0.0016 (15) | −0.003 (2) |
| C3 | 0.026 (2) | 0.030 (3) | 0.023 (3) | 0.0038 (19) | −0.0050 (17) | −0.001 (2) |
| C4 | 0.0295 (19) | 0.028 (3) | 0.021 (2) | −0.0039 (18) | 0.0058 (16) | −0.001 (2) |
| C5 | 0.0207 (18) | 0.027 (3) | 0.032 (3) | 0.0011 (19) | 0.0009 (16) | 0.000 (2) |
| C6 | 0.0229 (18) | 0.023 (3) | 0.025 (3) | 0.0020 (17) | −0.0027 (16) | −0.001 (2) |
| C7 | 0.026 (2) | 0.035 (3) | 0.019 (3) | 0.003 (2) | −0.0029 (17) | −0.004 (2) |
| Cl1 | 0.0208 (4) | 0.0165 (5) | 0.0182 (5) | 0.0004 (4) | −0.0004 (3) | −0.0003 (4) |
| O1 | 0.0220 (14) | 0.0215 (19) | 0.046 (2) | 0.0039 (12) | −0.0011 (14) | 0.0018 (18) |
| O2 | 0.0350 (15) | 0.0197 (18) | 0.0240 (18) | −0.0006 (13) | −0.0028 (13) | 0.0059 (15) |
| O3 | 0.0232 (14) | 0.026 (2) | 0.040 (2) | −0.0055 (13) | −0.0023 (13) | 0.0019 (17) |
| O4 | 0.056 (2) | 0.035 (2) | 0.0192 (17) | 0.0011 (18) | 0.0047 (16) | −0.0051 (16) |
| N3 | 0.0189 (14) | 0.0122 (19) | 0.019 (2) | 0.0020 (13) | 0.0013 (13) | −0.0005 (15) |
| N4 | 0.0229 (17) | 0.061 (4) | 0.028 (2) | 0.0016 (19) | 0.0012 (16) | 0.003 (2) |
| C8 | 0.0263 (17) | 0.022 (2) | 0.016 (2) | −0.0008 (19) | −0.0004 (15) | 0.001 (2) |
| C9 | 0.0162 (16) | 0.016 (2) | 0.024 (2) | 0.0016 (15) | 0.0018 (15) | 0.000 (2) |
| C10 | 0.0225 (18) | 0.027 (3) | 0.020 (2) | −0.0014 (17) | 0.0054 (16) | −0.001 (2) |
| C11 | 0.0272 (19) | 0.031 (3) | 0.017 (2) | 0.0028 (19) | −0.0008 (17) | −0.001 (2) |
| C12 | 0.0205 (17) | 0.031 (3) | 0.025 (3) | −0.0007 (17) | −0.0022 (17) | −0.006 (2) |
| C13 | 0.0180 (16) | 0.019 (3) | 0.027 (3) | −0.0033 (16) | 0.0034 (15) | −0.004 (2) |
| C14 | 0.0213 (19) | 0.033 (3) | 0.024 (3) | 0.0006 (18) | 0.0052 (17) | 0.000 (2) |
| Cl2 | 0.0207 (4) | 0.0245 (6) | 0.0188 (5) | −0.0032 (4) | 0.0023 (3) | 0.0007 (5) |
| O5 | 0.0409 (18) | 0.032 (2) | 0.026 (2) | −0.0075 (16) | −0.0042 (15) | 0.0064 (17) |
| O6 | 0.0260 (17) | 0.092 (4) | 0.071 (3) | −0.0020 (19) | 0.0140 (17) | 0.046 (3) |
| O7 | 0.058 (2) | 0.030 (2) | 0.042 (2) | 0.0098 (18) | −0.0241 (18) | −0.011 (2) |
| O8 | 0.058 (2) | 0.021 (2) | 0.043 (2) | 0.0024 (17) | 0.0123 (18) | −0.0073 (18) |
| N1—C6 | 1.338 (5) | N3—C13 | 1.337 (5) |
| N1—C2 | 1.363 (6) | N3—C9 | 1.363 (5) |
| N1—C1 | 1.487 (5) | N3—C8 | 1.486 (6) |
| N2—C7 | 1.135 (6) | N4—C14 | 1.134 (5) |
| C1—H1A | 0.9800 | C8—H8A | 0.9800 |
| C1—H1B | 0.9800 | C8—H8B | 0.9800 |
| C1—H1C | 0.9800 | C8—H8C | 0.9800 |
| C2—C3 | 1.370 (6) | C9—C10 | 1.368 (6) |
| C2—C7 | 1.446 (6) | C9—C14 | 1.451 (5) |
| C3—C4 | 1.392 (6) | C10—C11 | 1.391 (5) |
| C3—H3 | 0.9500 | C10—H10 | 0.9500 |
| C4—C5 | 1.370 (7) | C11—C12 | 1.379 (7) |
| C4—H4 | 0.9500 | C11—H11 | 0.9500 |
| C5—C6 | 1.383 (7) | C12—C13 | 1.370 (7) |
| C5—H5 | 0.9500 | C12—H12 | 0.9500 |
| C6—H6 | 0.9500 | C13—H13 | 0.9500 |
| Cl1—O4 | 1.430 (3) | Cl2—O6 | 1.425 (4) |
| Cl1—O3 | 1.435 (3) | Cl2—O7 | 1.431 (4) |
| Cl1—O1 | 1.442 (3) | Cl2—O8 | 1.434 (4) |
| Cl1—O2 | 1.444 (3) | Cl2—O5 | 1.439 (4) |
| C6—N1—C2 | 120.0 (4) | C13—N3—C9 | 119.2 (4) |
| C6—N1—C1 | 120.2 (4) | C13—N3—C8 | 119.9 (4) |
| C2—N1—C1 | 119.8 (3) | C9—N3—C8 | 120.9 (3) |
| N1—C1—H1A | 109.5 | N3—C8—H8A | 109.5 |
| N1—C1—H1B | 109.5 | N3—C8—H8B | 109.5 |
| H1A—C1—H1B | 109.5 | H8A—C8—H8B | 109.5 |
| N1—C1—H1C | 109.5 | N3—C8—H8C | 109.5 |
| H1A—C1—H1C | 109.5 | H8A—C8—H8C | 109.5 |
| H1B—C1—H1C | 109.5 | H8B—C8—H8C | 109.5 |
| N1—C2—C3 | 121.2 (4) | N3—C9—C10 | 121.7 (3) |
| N1—C2—C7 | 116.7 (4) | N3—C9—C14 | 117.0 (4) |
| C3—C2—C7 | 122.1 (4) | C10—C9—C14 | 121.3 (4) |
| C2—C3—C4 | 118.8 (4) | C9—C10—C11 | 119.0 (4) |
| C2—C3—H3 | 120.6 | C9—C10—H10 | 120.5 |
| C4—C3—H3 | 120.6 | C11—C10—H10 | 120.5 |
| C5—C4—C3 | 119.6 (5) | C12—C11—C10 | 118.7 (5) |
| C5—C4—H4 | 120.2 | C12—C11—H11 | 120.7 |
| C3—C4—H4 | 120.2 | C10—C11—H11 | 120.7 |
| C4—C5—C6 | 119.6 (4) | C13—C12—C11 | 120.0 (4) |
| C4—C5—H5 | 120.2 | C13—C12—H12 | 120.0 |
| C6—C5—H5 | 120.2 | C11—C12—H12 | 120.0 |
| N1—C6—C5 | 120.8 (4) | N3—C13—C12 | 121.5 (4) |
| N1—C6—H6 | 119.6 | N3—C13—H13 | 119.3 |
| C5—C6—H6 | 119.6 | C12—C13—H13 | 119.3 |
| N2—C7—C2 | 178.7 (6) | N4—C14—C9 | 176.8 (5) |
| O4—Cl1—O3 | 109.8 (2) | O6—Cl2—O7 | 110.1 (3) |
| O4—Cl1—O1 | 109.3 (2) | O6—Cl2—O8 | 110.4 (3) |
| O3—Cl1—O1 | 109.2 (2) | O7—Cl2—O8 | 108.3 (2) |
| O4—Cl1—O2 | 110.3 (2) | O6—Cl2—O5 | 109.5 (2) |
| O3—Cl1—O2 | 109.3 (2) | O7—Cl2—O5 | 108.7 (3) |
| O1—Cl1—O2 | 109.0 (2) | O8—Cl2—O5 | 109.8 (2) |
| C6—N1—C2—C3 | 0.0 (7) | C13—N3—C9—C10 | −0.3 (7) |
| C1—N1—C2—C3 | −178.3 (5) | C8—N3—C9—C10 | −177.4 (5) |
| C6—N1—C2—C7 | 178.6 (5) | C13—N3—C9—C14 | 179.9 (4) |
| C1—N1—C2—C7 | 0.3 (7) | C8—N3—C9—C14 | 2.8 (6) |
| N1—C2—C3—C4 | 0.1 (8) | N3—C9—C10—C11 | 0.4 (8) |
| C7—C2—C3—C4 | −178.5 (5) | C14—C9—C10—C11 | −179.8 (5) |
| C2—C3—C4—C5 | 0.1 (8) | C9—C10—C11—C12 | −1.0 (8) |
| C3—C4—C5—C6 | −0.2 (8) | C10—C11—C12—C13 | 1.5 (8) |
| C2—N1—C6—C5 | −0.1 (7) | C9—N3—C13—C12 | 0.8 (7) |
| C1—N1—C6—C5 | 178.2 (5) | C8—N3—C13—C12 | 178.0 (5) |
| C4—C5—C6—N1 | 0.3 (8) | C11—C12—C13—N3 | −1.4 (8) |
| H··· | ||||
| C1—H1 | 0.98 | 2.53 | 3.441 (5) | 154 |
| C1—H1 | 0.98 | 2.52 | 3.164 (5) | 123 |
| C3—H3···O5ii | 0.95 | 2.54 | 3.326 (5) | 140 |
| C5—H5···O8iii | 0.95 | 2.66 | 3.262 (6) | 122 |
| C6—H6···O1i | 0.95 | 2.55 | 3.415 (6) | 152 |
| C6—H6···O4i | 0.95 | 2.65 | 3.534 (6) | 155 |
| C8—H8 | 0.98 | 2.55 | 3.294 (6) | 132 |
| C8—H8 | 0.98 | 2.57 | 3.538 (6) | 169 |
| C8—H8 | 0.98 | 2.51 | 3.425 (5) | 156 |
| C10—H10···O2vi | 0.95 | 2.51 | 3.367 (5) | 150 |
| C12—H12···O2vii | 0.95 | 2.52 | 3.347 (5) | 145 |
| C13—H13···O6 | 0.95 | 2.35 | 3.247 (6) | 156 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| C1H1 | 0.98 | 2.53 | 3.441(5) | 154 |
| C1H1 | 0.98 | 2.52 | 3.164(5) | 123 |
| C3H3O5ii | 0.95 | 2.54 | 3.326(5) | 140 |
| C5H5O8iii | 0.95 | 2.66 | 3.262(6) | 122 |
| C6H6O1i | 0.95 | 2.55 | 3.415(6) | 152 |
| C6H6O4i | 0.95 | 2.65 | 3.534(6) | 155 |
| C8H8 | 0.98 | 2.55 | 3.294(6) | 132 |
| C8H8 | 0.98 | 2.57 | 3.538(6) | 169 |
| C8H8 | 0.98 | 2.51 | 3.425(5) | 156 |
| C10H10O2vi | 0.95 | 2.51 | 3.367(5) | 150 |
| C12H12O2vii | 0.95 | 2.52 | 3.347(5) | 145 |
| C13H13O6 | 0.95 | 2.35 | 3.247(6) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .